PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT41590.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 558aa MW: 59999.9 Da PI: 7.6259

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT41590.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.4	1.7e-40	165	271	2	114
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskk 99 ++ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ +a++sk+ PHT41590.1 165 PPPKRQTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSS-------LTAPPSKS 256 56799****************************************************************999766666666662.......22334444 PP TCP 100 sqksaasalnlakes 114 +++s +sal+la+ + PHT41590.1 257 APHSFHSALALAAAH 271 444444444444433 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MELTDLQSNN TNSTSKQQST TPSPPLHHQL QHQHQHQHQQ HQYQLLSQHH HQHHQQQQLQ 60 QQQQQHGRSS VPFMSSISIQ QPSAPPGITN SASPSPAAAA ATSASPSTSS PTPQQQQQQP 120 PHLVDASLAI ATRSDSLIDP NKKSQPQQQQ LAIQQTQIVP QPQQPPPKRQ TKDRHTKVDG 180 RGRRIRMPAA CAARVFQLTR ELGHKSDGET IEWLLQQAEP AIIAATGTGT IPANFSTLNI 240 SLRSSGSSLT APPSKSAPHS FHSALALAAA HHTPHPFEEG FSHMLGFHQN PHLLTQNPIA 300 ESLPGGGGGG GNSGDGSGGG QEGADNYLRK RYREDLFKEE GSSNPQGEAS GGSSSPSNKQ 360 FKGNSSQLPK SNSSQEGVAG PSSNMLRHTN MMPATGLWAV APPPSSGTTG SPFWMLPVTA 420 SGSGQTLSAP MASTSGTTTL ESQMWPFHMS SSNTIQAPLH FMPRFNIPPN LEFQSGRGNP 480 LQLGSMLMQQ QQQQPSQHLG LGMSETNLGM LAALNVYSRG GLNINSDHQS HPLEHHQQQQ 540 QPQPQPTDSD NDDPNNSQ

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MELTDLQSNN TNSTSKQQST TPSPPLHHQL QHQHQHQHQQ HQYQLLSQHH HQHHQQQQLQ  60
QQQQQHGRSS VPFMSSISIQ QPSAPPGITN SASPSPAAAA ATSASPSTSS PTPQQQQQQP  120
PHLVDASLAI ATRSDSLIDP NKKSQPQQQQ LAIQQTQIVP QPQQPPPKRQ TKDRHTKVDG  180
RGRRIRMPAA CAARVFQLTR ELGHKSDGET IEWLLQQAEP AIIAATGTGT IPANFSTLNI  240
SLRSSGSSLT APPSKSAPHS FHSALALAAA HHTPHPFEEG FSHMLGFHQN PHLLTQNPIA  300
ESLPGGGGGG GNSGDGSGGG QEGADNYLRK RYREDLFKEE GSSNPQGEAS GGSSSPSNKQ  360
FKGNSSQLPK SNSSQEGVAG PSSNMLRHTN MMPATGLWAV APPPSSGTTG SPFWMLPVTA  420
SGSGQTLSAP MASTSGTTTL ESQMWPFHMS SSNTIQAPLH FMPRFNIPPN LEFQSGRGNP  480
LQLGSMLMQQ QQQQPSQHLG LGMSETNLGM LAALNVYSRG GLNINSDHQS HPLEHHQQQQ  540
QPQPQPTDSD NDDPNNSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-52	TCP family protein