PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT41321.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 321aa    MW: 34544.9 Da    PI: 6.3145
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT41321.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.17.3e-09154179227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 k e Cr +  +GtC++G++C+F Hg+
  PHT41321.1 154 KSETCRWWEDFGTCRFGSKCRFVHGK 179
                 6789********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MEFFYGSSND LQAFDGDVSP IIARSRFYHG SKSQILDPYA SSDSTGSNIV SPLARYLCPS  60
SPVPFTSDSP KRRSLNSGSR SGSGGGIVSR SPLASIENIE IPPVFRNPVK VEEDVVVMDG  120
ILVEPKHGVR GKSSPSTSDS GGRLTSGSEN SFHKSETCRW WEDFGTCRFG SKCRFVHGKE  180
DLRPTAFANR NQSEALYSRS YSSGSSSYGP RGRSVHHQVH SAAPTPTEAA AAAMATPTTT  240
SNVKKGDKEP SSSESSTTSI STIAISDTDW SPLDDNIEVT LPSSGEKCAS RDDVDAHIRT  300
VLYGPSGRKR LPVFADFDEE E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.23e-06C3H family protein