PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT40994.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 650aa MW: 74053.3 Da PI: 8.4825

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT40994.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	462	503	2	40
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W++eE +ll ++v ++++g +W+ I++++g+ Rt +++ PHT40994.1 462 KPWSKEEVDLLRKGVLKYPKGtsrRWEVISEYIGTARTVEEI 503 69********************************99998775 PP
2	Myb_DNA-binding	28.3	4.1e-09	594	637	4	45
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ ++ lv+a k ++++ +W+++a ++ g+t +qck ++ PHT40994.1 594 WSAVQEKALVQALKTFPKEtsqRWERVATAVP-GKTVNQCKKKFA 637 ******************************.******9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MASKSSVRLI SYSEEIINGE PIYISSNCCP IKANKYEPAG LAFHSAALRL IGHVEKEDPE 60 DGKEDVPNDK EQPFMYSSES YSSKGKKKSS TGEKIQDHYA LLGLSHLRYL ASEDQIRKSY 120 RDAALRHHPD KLASLLLAEE TEAAKQAKKE EIENHFKAIQ EAYEVLIDPV RRRIYDSTDE 180 FDDEIPTECA PQDFFKVFGP AFLRNGRWSV TQPLPSLGDE NTPIKEVDSF YNFWYSFKSW 240 REFPHADEFD LEQAESRDHK RWMERQNAKL SEKARKEESA RIRTLVDNAY RRDPRILGRK 300 EAEKAEKQRK KEAKILAKKL QEEEAARIVE EEKRKKEEEE KKAAEVASQQ KKLKEKEKKL 360 LRKERSRLRT LAAPVLSQHL LGLTDDDVEG VCMSLDIEQL RNLCDKLDGK GELVKAELIR 420 EALGQEHNSK YENKDENSKS QQNGSLEDKR QVSLMSSEKR EKPWSKEEVD LLRKGVLKYP 480 KGTSRRWEVI SEYIGTARTV EEILKATKTV LLQKPDSAKA FDSFLEKRKP APTIASPLST 540 RAEVEGVDNS SKPESGSAKL ANSQESPSQN TNSQKTEDAP AANGVSSSSD SDIWSAVQEK 600 ALVQALKTFP KETSQRWERV ATAVPGKTVN QCKKKFALLK ENFRNKKSAV

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MASKSSVRLI SYSEEIINGE PIYISSNCCP IKANKYEPAG LAFHSAALRL IGHVEKEDPE  60
DGKEDVPNDK EQPFMYSSES YSSKGKKKSS TGEKIQDHYA LLGLSHLRYL ASEDQIRKSY  120
RDAALRHHPD KLASLLLAEE TEAAKQAKKE EIENHFKAIQ EAYEVLIDPV RRRIYDSTDE  180
FDDEIPTECA PQDFFKVFGP AFLRNGRWSV TQPLPSLGDE NTPIKEVDSF YNFWYSFKSW  240
REFPHADEFD LEQAESRDHK RWMERQNAKL SEKARKEESA RIRTLVDNAY RRDPRILGRK  300
EAEKAEKQRK KEAKILAKKL QEEEAARIVE EEKRKKEEEE KKAAEVASQQ KKLKEKEKKL  360
LRKERSRLRT LAAPVLSQHL LGLTDDDVEG VCMSLDIEQL RNLCDKLDGK GELVKAELIR  420
EALGQEHNSK YENKDENSKS QQNGSLEDKR QVSLMSSEKR EKPWSKEEVD LLRKGVLKYP  480
KGTSRRWEVI SEYIGTARTV EEILKATKTV LLQKPDSAKA FDSFLEKRKP APTIASPLST  540
RAEVEGVDNS SKPESGSAKL ANSQESPSQN TNSQKTEDAP AANGVSSSSD SDIWSAVQEK  600
ALVQALKTFP KETSQRWERV ATAVPGKTVN QCKKKFALLK ENFRNKKSAV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	356	KRKKEEEEKKAAEVASQQKKLKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	0.0	MYB family protein