PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT40737.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25130.6 Da PI: 8.9254 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.7 | 5.5e-22 | 17 | 65 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +ie k qvtfskRr g++KKA+EL++LC++e+a+i+fs+ k++ +s PHT40737.1 17 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPARKVFSFS 65 58888899*************************************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MAKKPSSMGR QKIKIAKIEV KNHLQVTFSK RRSGLFKKAS ELCTLCGVEI AIIVFSPARK 60 VFSFSHTNVE SLIDRFLSRN NTNNNPYANN SLQLVEAHRN ANVCGLNLEL TQILGEVEIE 120 KKRGESLDQI RKTSQSQCWW EAPISQLDLQ ELEQLKDSME ALKKYVTNQA SKFMVNEIVN 180 SSTFFGDNGN GIFDNNDIKP PRTTPSLTDL YNHSLGFDSA ALF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-52 | M-type_MADS family protein |