PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT40735.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 223aa    MW: 25067.6 Da    PI: 9.194
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT40735.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.61.2e-211762247
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                +ie k n qvtfskRr g++KKA+EL++LC++e+a+i++s+  k++
  PHT40735.1 17 KIEVKNNLQVTFSKRRSGLFKKASELCTLCGVEIAIIVISPARKVF 62
                69999************************************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MAKKPSSMGR QKIKIAKIEV KNNLQVTFSK RRSGLFKKAS ELCTLCGVEI AIIVISPARK  60
VFFFGHTNVE SLIDRFLSRN NTNNNPYANN SLQLVEAHRN ANVCGLNLQL TQILGEVEIE  120
KKRGESLDQM RKTSQSQCWW EAPISQLDLQ ELEQLKDSME ALKKYVTNQA SKFMVNEIAN  180
SSTFFGDNGN GILDNYDIKP PRTTPSSSDL YNHSLGFDSA ALF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-52M-type_MADS family protein