PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT40387.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 347aa    MW: 38760.7 Da    PI: 7.6995
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT40387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.8e-07122141626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C+ f++ G+Ck Gd C +aHg
  PHT40387.1 122 CPEFRK-GQCKKGDACEYAHG 141
                 ******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MMMIGRSPHS HPTVQVPPWD VMDDQSVDVH SPFSVSPDSA FDALTALQRY LPSNVNDVMF  60
DSDGLDIPVD AFSCDNFRMY EFKVRKCARG RSHDWTECPY AHPGEKARRR DPRKYHYSGT  120
SCPEFRKGQC KKGDACEYAH GVFECWLHPA RYRTQPCKDG THCRRRVCFF AHTPEQLRVL  180
PQNSPRSHAE LLDSFDGSPS RLGFESFSSS PPYDSPPVTP RGSLSLNSVN GLAESMRNMQ  240
IGMVRGMSST PTPTWGLQMG SPGFGSPRSP SVLRPGFMSL PTTPTRNPIG LGLAVFDQWE  300
KSCEEEPAME RVESGRDLRA KIYAKLSMEN SLDSGASDVG WVSKLVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-116C3H family protein