PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT40104.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 343aa MW: 37917.2 Da PI: 5.1482

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT40104.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.4	5.3e-07	13	52	6	39
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++ + + fC+ + +lC +C +++H H + PHT40104.1 13 CDACKAAPSTVFCKADMAFLCLTCDSKIHAAnklasrHAR 52 *****************************65566666655 PP
2	zf-B_box	24.9	4.2e-08	54	98	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ +++ C+ + lC +C + +H+ H++vp+ PHT40104.1 54 LVCEVCEHAPASVTCKADAAALCITCDQDIHSAnplarrHERVPV 98 68****************************6689999999986 PP
3	CCT	69	1.3e-23	278	321	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ PHT40104.1 278 REARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 321 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MVVESWSTTA KGCDACKAAP STVFCKADMA FLCLTCDSKI HAANKLASRH ARVLVCEVCE 60 HAPASVTCKA DAAALCITCD QDIHSANPLA RRHERVPVVP FYDSSSARSQ TADDENDPPR 120 LQFEEEEAEA ESWLLQAPNN NQEADEYKSS AAAEYLFGDV DSYVEVDMVS DQKPSNKANT 180 DIQLHQDCVV PHVENKNTEI QLHGPVVDGY PSYEMDFSAG SKPFMYNFST QSISQSVSSS 240 SMEVGVVPDH NTMTDVSTTF VRNSVIDGLP NPISSSDREA RVLRYREKRK NRRFEKTIRY 300 ASRKAYAETR PRIKGRFAKR TESDVVDSLV GAADTSYGVV PSF

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MVVESWSTTA KGCDACKAAP STVFCKADMA FLCLTCDSKI HAANKLASRH ARVLVCEVCE  60
HAPASVTCKA DAAALCITCD QDIHSANPLA RRHERVPVVP FYDSSSARSQ TADDENDPPR  120
LQFEEEEAEA ESWLLQAPNN NQEADEYKSS AAAEYLFGDV DSYVEVDMVS DQKPSNKANT  180
DIQLHQDCVV PHVENKNTEI QLHGPVVDGY PSYEMDFSAG SKPFMYNFST QSISQSVSSS  240
SMEVGVVPDH NTMTDVSTTF VRNSVIDGLP NPISSSDREA RVLRYREKRK NRRFEKTIRY  300
ASRKAYAETR PRIKGRFAKR TESDVVDSLV GAADTSYGVV PSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	3e-93	CO-like family protein