PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39983.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 576aa MW: 66735.9 Da PI: 4.7712

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.8	4.6e-14	287	366	10	99
HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 v ++ +p f+ ++ +g +++ ++ + g++W vk+ ++++ l++GW++F+++++L+ gD+++F+++g++ef v++f++ PHT39983.1 287 VIGDHLQKIPIGFL-KYlKGH--DHIEHVVLKRAGNKWLVKM--NGRR----LEDGWEKFAEEHDLQLGDMLIFRHEGDMEF--DVSIFDS 366 55666778999999.554544..5678999999*******..8888....**********************999999..9999986 PP
2	B3	45.5	1.4e-14	456	542	5	95
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++++ l+++ ++lp +fa+++g+ + ++++ de+ rsW+v + + ++ + +++GW +F k+ng+++gD+ F+l++ +++ +vv+ PHT39983.1 456 TIKPYCLSKHFVYLPMDFAKSNGLMD--KHEMIIVDEKRRSWSVWI--GRIDEFhFGIKRGWTQFRKENGVQVGDTYRFELTN-NGTIPVVH 542 5789999*************7774..348999********..7777776889********************976.55556666 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MILREGKLYY LGDKVVIESS KVDAKPQYGE HEEVEIQDEE EGEDAWLCGG HVRYLFKRAL 60 ITARFAQSAH GYSLFPLNKP EGMVIVLVYM DDLLITDDNK SMISESKEEL HRKYILELIS 120 ETGLVGAKLV FTPMDPNVKL TSVEYDKATG CTADVVLKDA TLYQRLVGKL MYATITKPNI 180 KLTWPEGLFK ELNVPISKPI SLFSETDPNP TYKNELDDFV VAIDKDHFSL VKFLSYTNDL 240 EYTKVKEFYC QHIDGGDLVQ ITNDRQLLDF VKDLRQSDEG DVFVEHVIGD HLQKIPIGFL 300 KYLKGHDHIE HVVLKRAGNK WLVKMNGRRL EDGWEKFAEE HDLQLGDMLI FRHEGDMEFD 360 VSIFDSTHCV TKYVEYMQIV EEKDKKVEDK NEDDEVVEDE NDEEDEDDEA YTHDKPFGQS 420 HFEFTIRQYC LSKGKTFSNV EAVKDANLSH SHFICTIKPY CLSKHFVYLP MDFAKSNGLM 480 DKHEMIIVDE KRRSWSVWIG RIDEFHFGIK RGWTQFRKEN GVQVGDTYRF ELTNNGTIPV 540 VHFLFLLLIL IAGWLQHFSL VDIIWLCSEA IEICVD

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MILREGKLYY LGDKVVIESS KVDAKPQYGE HEEVEIQDEE EGEDAWLCGG HVRYLFKRAL  60
ITARFAQSAH GYSLFPLNKP EGMVIVLVYM DDLLITDDNK SMISESKEEL HRKYILELIS  120
ETGLVGAKLV FTPMDPNVKL TSVEYDKATG CTADVVLKDA TLYQRLVGKL MYATITKPNI  180
KLTWPEGLFK ELNVPISKPI SLFSETDPNP TYKNELDDFV VAIDKDHFSL VKFLSYTNDL  240
EYTKVKEFYC QHIDGGDLVQ ITNDRQLLDF VKDLRQSDEG DVFVEHVIGD HLQKIPIGFL  300
KYLKGHDHIE HVVLKRAGNK WLVKMNGRRL EDGWEKFAEE HDLQLGDMLI FRHEGDMEFD  360
VSIFDSTHCV TKYVEYMQIV EEKDKKVEDK NEDDEVVEDE NDEEDEDDEA YTHDKPFGQS  420
HFEFTIRQYC LSKGKTFSNV EAVKDANLSH SHFICTIKPY CLSKHFVYLP MDFAKSNGLM  480
DKHEMIIVDE KRRSWSVWIG RIDEFHFGIK RGWTQFRKEN GVQVGDTYRF ELTNNGTIPV  540
VHFLFLLLIL IAGWLQHFSL VDIIWLCSEA IEICVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	1e-26	B3 family protein