PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39767.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GATA

Protein Properties

Length: 657aa MW: 73196.8 Da PI: 7.2516

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39767.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	37.5	3.3e-12	126	155	6	35
GATA 6 ttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 + +TplWR+gp ++ LCnaCG ++r kg+ PHT39767.1 126 AADTPLWRNGPPEKPILCNACGSRWRTKGT 155 678******66666*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence
MLDSRSCLAG LDIVMVGSFC QILRLPLNWK LSPMMILLKS HLLEIGNVFF LDIDLCGNCL 60 CPQRCHTGTC GFYSVFCHGF FIPVALICFY LSQGSIGNSL SISQEIWVIL PEIIYFEYSL 120 NHQNHAADTP LWRNGPPEKP ILCNACGSRW RTKGTLANYT PLHARAEPCY SEDHRVSRFK 180 NVSIKNKEAK VLKRKQSHDN ADAGTPPDYN LGFRKVLDED ISNRSSSGSA ISNSESCAQF 240 GSAEASDLTG PAQSNIWDTT VPSRKRTCFN RPKPSSVEKL TKDLYTILHE QQSSYLCASS 300 EEELLFESHK SMVSVEIGHG SVLIRHPSSI GREEESEASS LSVDNKHRSV SDAYSRLTTP 360 LVNISKGVNS PNMSTERTKK PTGPVMEQDQ IKRNKDHVEK LQILGHHNSA LRYIDLKDVL 420 NYEEFTSHLS SDEQQQLLKY LPPVDSFAPP DSLRTVFESS QFEESLSSFQ KLLAEGVFDN 480 SLPGVNLEDC RTLKRFILCY LAKSKWVQQY NLLKDTKCKN NSSGSEVTGE PSVIATCHSV 540 SVKKPREGQH LKYSGAKAAM KSPKRVVMKS IYEQKELAAS DGSCFSPRSS FTLPSENNSL 600 MLDPFHSANQ NSDQDLLLDV PSNSCFPQAE LLVPTSSFTT QASTSSSSMY PPHFVRP

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence

MLDSRSCLAG LDIVMVGSFC QILRLPLNWK LSPMMILLKS HLLEIGNVFF LDIDLCGNCL  60
CPQRCHTGTC GFYSVFCHGF FIPVALICFY LSQGSIGNSL SISQEIWVIL PEIIYFEYSL  120
NHQNHAADTP LWRNGPPEKP ILCNACGSRW RTKGTLANYT PLHARAEPCY SEDHRVSRFK  180
NVSIKNKEAK VLKRKQSHDN ADAGTPPDYN LGFRKVLDED ISNRSSSGSA ISNSESCAQF  240
GSAEASDLTG PAQSNIWDTT VPSRKRTCFN RPKPSSVEKL TKDLYTILHE QQSSYLCASS  300
EEELLFESHK SMVSVEIGHG SVLIRHPSSI GREEESEASS LSVDNKHRSV SDAYSRLTTP  360
LVNISKGVNS PNMSTERTKK PTGPVMEQDQ IKRNKDHVEK LQILGHHNSA LRYIDLKDVL  420
NYEEFTSHLS SDEQQQLLKY LPPVDSFAPP DSLRTVFESS QFEESLSSFQ KLLAEGVFDN  480
SLPGVNLEDC RTLKRFILCY LAKSKWVQQY NLLKDTKCKN NSSGSEVTGE PSVIATCHSV  540
SVKKPREGQH LKYSGAKAAM KSPKRVVMKS IYEQKELAAS DGSCFSPRSS FTLPSENNSL  600
MLDPFHSANQ NSDQDLLLDV PSNSCFPQAE LLVPTSSFTT QASTSSSSMY PPHFVRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.2	1e-125	GATA family protein