PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39436.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 471aa MW: 52801.3 Da PI: 5.8116

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39436.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.3e-09	286	333	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq PHT39436.1 286 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 333 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MEKGNLFMND DNTTIGSSYE QLQNCFFNPN LDLDNSNNNN SDPFESALSS MVSSPIVSIP 60 NNNSNSNSNS SHGGDNFVLR ELIGRLGSIC NSREMSPNSH NMYNNKNNYN NSSTNNSCYS 120 TPLNSPPKLN LSMMGNLPPT QFTTDPGFVE RAARFSCFAT NLESGQLSRV SSNQEFKDVN 180 LLQRNSDQFG DNSRENSSVS EQIPSGEIGS RKRKSISKGK STKIANEKNE SNAKRSKSEE 240 NDNNNNNKAK EEEKAVVEEN KDNQKPPEPP KDYIHVRARR GQATDAHSLA ERVRREKISE 300 RMKLLQDLVP GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPRM DFNMEALLSK 360 DMFQSRGSLA HNMMYQSENS TQAFPYGFQS QPNQNFQKGT DFPFPINSLN NNLMRNSNMQ 420 LPPPDGFVEP TPQVPTFFED DLNSVVQMGF GQNQNQSFPG NIPNSQMKVE L

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MEKGNLFMND DNTTIGSSYE QLQNCFFNPN LDLDNSNNNN SDPFESALSS MVSSPIVSIP  60
NNNSNSNSNS SHGGDNFVLR ELIGRLGSIC NSREMSPNSH NMYNNKNNYN NSSTNNSCYS  120
TPLNSPPKLN LSMMGNLPPT QFTTDPGFVE RAARFSCFAT NLESGQLSRV SSNQEFKDVN  180
LLQRNSDQFG DNSRENSSVS EQIPSGEIGS RKRKSISKGK STKIANEKNE SNAKRSKSEE  240
NDNNNNNKAK EEEKAVVEEN KDNQKPPEPP KDYIHVRARR GQATDAHSLA ERVRREKISE  300
RMKLLQDLVP GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPRM DFNMEALLSK  360
DMFQSRGSLA HNMMYQSENS TQAFPYGFQS QPNQNFQKGT DFPFPINSLN NNLMRNSNMQ  420
LPPPDGFVEP TPQVPTFFED DLNSVVQMGF GQNQNQSFPG NIPNSQMKVE L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	215	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-78	bHLH family protein