PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39068.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 664aa MW: 74648.8 Da PI: 4.6142

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	58.8	1e-18	268	314	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 +isl+dl+++F ++ ++AA +L+v++++LKriCR++GI+RWP+ ik PHT39068.1 268 SISLNDLKQHFGKKREEAAESLDVSVSTLKRICRENGISRWPSKNIK 314 69******************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence
MMLRDEEEVE LSEMELNDMV NPLISSPAST SWKIQQVWEP DMLYVDCSLL PASPMGDFTL 60 WNHSWSPPPP PHYHHQESGM IKGAAKAFDA QLQEDAAGGA LLTNDWRFEL LPDSRQRIAN 120 KFILTLRRHL PVSGVGLLEL RKIAIRFEEE VYTAATSQSD YLRKMSLKML TMETKCQNPV 180 CAETVPVVDE SLHVQLDAKS PPEDPTLHYL QSGEECALPD PQRSVTEHGN LKRKGDAGPS 240 GQNHTICDLG SKQKMDKKMK KTWGIGGSIS LNDLKQHFGK KREEAAESLD VSVSTLKRIC 300 RENGISRWPS KNIKRERLLL SNLSINETVA EAGGGRISIS TTPTAFASTE VLAKSNQQNN 360 LSLDNEIGTS INHGVLRNDE GNGETIMIQE GDSADQEVLY KPQGFEPGRD SFNPAYSSSD 420 APTILYPLPQ ERMPAEDSPD QQGEEIARQI EITDGTSHLE KQCLGRERLG CNTEKEVIVR 480 VEDSSSYDFG SVLELIQDHH ADFASFHEVD KDPLISTDDL ESNCIKSQST LVSESEPSLL 540 NDARRMKLVF EKLITLPLED LTNTNQEASM KEALTILSGN LSLFTDEQAK QLLEFKFDFP 600 TIMYSWRDCS QTRIDCRNFL AEFERTNSLL ETSTKEEVDL KDRYTQIECK EKEMLAQFLM 660 HNNS

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence

MMLRDEEEVE LSEMELNDMV NPLISSPAST SWKIQQVWEP DMLYVDCSLL PASPMGDFTL  60
WNHSWSPPPP PHYHHQESGM IKGAAKAFDA QLQEDAAGGA LLTNDWRFEL LPDSRQRIAN  120
KFILTLRRHL PVSGVGLLEL RKIAIRFEEE VYTAATSQSD YLRKMSLKML TMETKCQNPV  180
CAETVPVVDE SLHVQLDAKS PPEDPTLHYL QSGEECALPD PQRSVTEHGN LKRKGDAGPS  240
GQNHTICDLG SKQKMDKKMK KTWGIGGSIS LNDLKQHFGK KREEAAESLD VSVSTLKRIC  300
RENGISRWPS KNIKRERLLL SNLSINETVA EAGGGRISIS TTPTAFASTE VLAKSNQQNN  360
LSLDNEIGTS INHGVLRNDE GNGETIMIQE GDSADQEVLY KPQGFEPGRD SFNPAYSSSD  420
APTILYPLPQ ERMPAEDSPD QQGEEIARQI EITDGTSHLE KQCLGRERLG CNTEKEVIVR  480
VEDSSSYDFG SVLELIQDHH ADFASFHEVD KDPLISTDDL ESNCIKSQST LVSESEPSLL  540
NDARRMKLVF EKLITLPLED LTNTNQEASM KEALTILSGN LSLFTDEQAK QLLEFKFDFP  600
TIMYSWRDCS QTRIDCRNFL AEFERTNSLL ETSTKEEVDL KDRYTQIECK EKEMLAQFLM  660
HNNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15790.1	1e-17	bHLH family protein