PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT38827.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ZF-HD

Protein Properties

Length: 846aa MW: 93771.3 Da PI: 7.1128

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT38827.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	94	1.2e-29	692	747	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY+eClkNhAas+GghavDG gEfmps g gt+++lkCaAC CH nFHR+e ++ PHT38827.1 692 SVRYRECLKNHAASMGGHAVDGYGEFMPS-GGIGTPETLKCAACSCHQNFHRKEIHD 747 69************************9.7889*****************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 846 aa Download sequence
MTKIRVSFKA KFPTKGVVMI RSYDALHVFL DFNNEKDYEC LLMKGKVVVA GAVMKVFKWT 60 PQFHDHQFRE TFGVMEQDNT KGDEHIGSGN ECGIKEAEAL PENSLIQRDV SYISDSVDCV 120 PEVTHSDSED RVASPVNSET SERRSSVEIS CSGFSGLASA PYGIAGRIPS VAFESSSMCS 180 TDFVPFRGTC LNHNNQKSYS REWNYGSKSI SEAAGWACET LGQPLSSLPI VEHHENQKSR 240 LPIEVQYSAS MGYPTLAFPV NHCESLVPGY KRTLIENFSY RRLKMKEIRI DFRAKNLLKG 300 QVKIRHCTSR QILFLFTNEK DYYTILYKRA FILAGSLMQI SWSSPDSHHE VVAFDFAWIQ 360 YLNFLLLTVY HICLCDDTKT VLGKRNQNIH PDFRFSDANP VNWNTNTSKL HPSINGLSAA 420 QNIIARSPYD VMDYSSSIGW NHRSKLTSDI SISCEETRSN SQAIVLSSSV QQLLKKEVVI 480 SYPSDLTEAD GEKPSLEMPN VSFPTRSPPR SIGSVIQAMS KLKVLDDPNS VNRSVSDSSK 540 PTQQSATMVN SAETSVLLNA DPHKGIKPKA MEKPSVQSVS ITAKNFQSHH VTAPATDEKP 600 QVPAISECLS APSVPPPLPL LGHSASIAAL FFGRNEQAGR ESTFPSPSKA LDQHSLAQQH 660 NQLNSYKEPN MTVGIEQLQP PSTTSVSETT ISVRYRECLK NHAASMGGHA VDGYGEFMPS 720 GGIGTPETLK CAACSCHQNF HRKEIHDHPQ IADVGSHSTF SPPRNISSSD SIQNQAPISA 780 PTRQLHHHHS LVDSSPYYSQ PPSPKSGPVF SQQGLERIEP SFILPSYSYE MVNHDTVQNG 840 QQREYS

Sequence ? help Back to Top

Protein Sequence Length: 846 aa Download sequence

MTKIRVSFKA KFPTKGVVMI RSYDALHVFL DFNNEKDYEC LLMKGKVVVA GAVMKVFKWT  60
PQFHDHQFRE TFGVMEQDNT KGDEHIGSGN ECGIKEAEAL PENSLIQRDV SYISDSVDCV  120
PEVTHSDSED RVASPVNSET SERRSSVEIS CSGFSGLASA PYGIAGRIPS VAFESSSMCS  180
TDFVPFRGTC LNHNNQKSYS REWNYGSKSI SEAAGWACET LGQPLSSLPI VEHHENQKSR  240
LPIEVQYSAS MGYPTLAFPV NHCESLVPGY KRTLIENFSY RRLKMKEIRI DFRAKNLLKG  300
QVKIRHCTSR QILFLFTNEK DYYTILYKRA FILAGSLMQI SWSSPDSHHE VVAFDFAWIQ  360
YLNFLLLTVY HICLCDDTKT VLGKRNQNIH PDFRFSDANP VNWNTNTSKL HPSINGLSAA  420
QNIIARSPYD VMDYSSSIGW NHRSKLTSDI SISCEETRSN SQAIVLSSSV QQLLKKEVVI  480
SYPSDLTEAD GEKPSLEMPN VSFPTRSPPR SIGSVIQAMS KLKVLDDPNS VNRSVSDSSK  540
PTQQSATMVN SAETSVLLNA DPHKGIKPKA MEKPSVQSVS ITAKNFQSHH VTAPATDEKP  600
QVPAISECLS APSVPPPLPL LGHSASIAAL FFGRNEQAGR ESTFPSPSKA LDQHSLAQQH  660
NQLNSYKEPN MTVGIEQLQP PSTTSVSETT ISVRYRECLK NHAASMGGHA VDGYGEFMPS  720
GGIGTPETLK CAACSCHQNF HRKEIHDHPQ IADVGSHSTF SPPRNISSSD SIQNQAPISA  780
PTRQLHHHHS LVDSSPYYSQ PPSPKSGPVF SQQGLERIEP SFILPSYSYE MVNHDTVQNG  840
QQREYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-21	ZF-HD family protein