PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT38523.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HB-other

Protein Properties

Length: 986aa MW: 109313 Da PI: 7.7234

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT38523.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.4	7.4e-06	64	120	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + ++++e +e+++ g+t +qV+ +F +R++ ++ PHT38523.1 64 KRPRDLLNPKTIKYMQSIFSAKDAINKKETREISALFGVTATQVRDFFTAQRTRVRR 120 799***************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 986 aa Download sequence
MEKNQLQLAL ISPPTISLFD SHKEILYCQI DQLHNIVLQQ CELTGVNPLS QEMAAGALSI 60 KIGKRPRDLL NPKTIKYMQS IFSAKDAINK KETREISALF GVTATQVRDF FTAQRTRVRR 120 FLRFSREKPS ISNVSIEGPC PIPLSSDPSS QTEPVPLNSV DPTCTEEGPS CSTQDEVLTG 180 IEERDRHFVD NILTLMRREE TFSGQVKLMD WILEVQNPSV LYWFLTKGGV MILAAWLGQA 240 AGEEQTSVLH IILKVLCHLP LHKAFPVQMS TILQSVNSLR FYRTPDISNR ARILLARWSK 300 MFAKSQAMKK RNGIKSATDV QDELLLQQSI SEVVGDEIWN SKIEDVEEAH ANLCGTSENS 360 RKLDSPLPVK LLTAPPDDSN KRLKGALVSK TRERRKIQLM EQPSQRTAGR SIGRPAPATQ 420 GRPLSADDIQ KAKMRAQFMQ SKYGKANNDD SSRVKPQAPN GITSSPDDIL HGAPKLQDRP 480 KVDECEKPNS VSSKGSNQLE NHLKLSFDVE EPLPKRCKRM QIPWRKPPEV QLSDTWKVCV 540 GSESKEVDIQ NNRIRRERET IYRTVQDIPL NPKEPWDCEM DPDDTLTPEI PIEQLPDADG 600 AETAGMQLED SGAVAALASM SNGIATTAVP DVELLTILLK NPELVYALTS GQGGNLSSEQ 660 TVRLLDLIKA NGMNALIDQT NLGRDAEKKV EVSLPSPTPS SDPGTSGATL QNFAKNPFSQ 720 RSSMVVPQAN GVPQHTALVH SHEMLQASSV VHQQMPLAPQ LAQQLALLQA AAGSYGKNDH 780 RPSPLNPSIN QTVFANPAPA VNISSYSPFG LTEYNLLTAT AAAAATRIPV EAYGNIRTSQ 840 MPIANVQQRA MSLHSPQMTP PMQQLQTQSQ PQMWGAMPGT ALNRGYQENS IPNHYNPHVA 900 AHVEPGLQQA AWRGNNYVEE AGFESWSPDN SPVRRQDQVA RWNYQEPGMN MRDNNYRPDS 960 STSRNPGHFS GCRGPPDNCG YKRWRR

Sequence ? help Back to Top

Protein Sequence Length: 986 aa Download sequence

MEKNQLQLAL ISPPTISLFD SHKEILYCQI DQLHNIVLQQ CELTGVNPLS QEMAAGALSI  60
KIGKRPRDLL NPKTIKYMQS IFSAKDAINK KETREISALF GVTATQVRDF FTAQRTRVRR  120
FLRFSREKPS ISNVSIEGPC PIPLSSDPSS QTEPVPLNSV DPTCTEEGPS CSTQDEVLTG  180
IEERDRHFVD NILTLMRREE TFSGQVKLMD WILEVQNPSV LYWFLTKGGV MILAAWLGQA  240
AGEEQTSVLH IILKVLCHLP LHKAFPVQMS TILQSVNSLR FYRTPDISNR ARILLARWSK  300
MFAKSQAMKK RNGIKSATDV QDELLLQQSI SEVVGDEIWN SKIEDVEEAH ANLCGTSENS  360
RKLDSPLPVK LLTAPPDDSN KRLKGALVSK TRERRKIQLM EQPSQRTAGR SIGRPAPATQ  420
GRPLSADDIQ KAKMRAQFMQ SKYGKANNDD SSRVKPQAPN GITSSPDDIL HGAPKLQDRP  480
KVDECEKPNS VSSKGSNQLE NHLKLSFDVE EPLPKRCKRM QIPWRKPPEV QLSDTWKVCV  540
GSESKEVDIQ NNRIRRERET IYRTVQDIPL NPKEPWDCEM DPDDTLTPEI PIEQLPDADG  600
AETAGMQLED SGAVAALASM SNGIATTAVP DVELLTILLK NPELVYALTS GQGGNLSSEQ  660
TVRLLDLIKA NGMNALIDQT NLGRDAEKKV EVSLPSPTPS SDPGTSGATL QNFAKNPFSQ  720
RSSMVVPQAN GVPQHTALVH SHEMLQASSV VHQQMPLAPQ LAQQLALLQA AAGSYGKNDH  780
RPSPLNPSIN QTVFANPAPA VNISSYSPFG LTEYNLLTAT AAAAATRIPV EAYGNIRTSQ  840
MPIANVQQRA MSLHSPQMTP PMQQLQTQSQ PQMWGAMPGT ALNRGYQENS IPNHYNPHVA  900
AHVEPGLQQA AWRGNNYVEE AGFESWSPDN SPVRRQDQVA RWNYQEPGMN MRDNNYRPDS  960
STSRNPGHFS GCRGPPDNCG YKRWRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-148	HB-other family protein