PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT38477.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 387aa MW: 43397 Da PI: 5.4594

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT38477.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.8	4e-07	20	61	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + C+ ++++ + l+C+ ++ lC +C e H+ Ht+ PHT38477.1 20 PLCDFCGDNTALLYCRADSARLCFTCDREVHSTnqlftkHTR 61 78*****************************66778888875 PP
2	zf-B_box	19.8	1.6e-06	64	107	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C++++ ++++ C + ++ +C++C e Hk+ H+++pl PHT38477.1 64 LCNLCDTSPASILCSTESSVVCQNCDWECHKQvsvssvHERRPL 107 6**************************999999999998875 PP
3	CCT	62.1	1.7e-21	336	377	1	42
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 Re a++RYkeK+ktR++eK+irYesRKa+AesR R+KGrF+k PHT38477.1 336 RETAVSRYKEKKKTRRYEKHIRYESRKARAESRTRIKGRFAK 377 99***************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MTELKEDQEN HQQQPQRTRP LCDFCGDNTA LLYCRADSAR LCFTCDREVH STNQLFTKHT 60 RWLLCNLCDT SPASILCSTE SSVVCQNCDW ECHKQVSVSS VHERRPLEGF NGCPCVSELL 120 SLLGFEDLGK KDLSYGGDDV CSGDGGGGYG FSDWVIWDTP SVVSLDDLIA SSDSGHNFQA 180 VGVPPLPKNR NAACGKHKEE ILCQLRELSK LEPNSSDDQD ETVPNIGFQY MEPAQNLQSG 240 PRGSGFMQKT EQHVVPSSEG SAFNWCGDSG EFADQGFSSS LADCFIETKC LFPNRDSDVC 300 DASGRANEEQ SHNPPTTETF QMVPKVAHRE LNSQERETAV SRYKEKKKTR RYEKHIRYES 360 RKARAESRTR IKGRFAKMDY RDSSVHQ

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MTELKEDQEN HQQQPQRTRP LCDFCGDNTA LLYCRADSAR LCFTCDREVH STNQLFTKHT  60
RWLLCNLCDT SPASILCSTE SSVVCQNCDW ECHKQVSVSS VHERRPLEGF NGCPCVSELL  120
SLLGFEDLGK KDLSYGGDDV CSGDGGGGYG FSDWVIWDTP SVVSLDDLIA SSDSGHNFQA  180
VGVPPLPKNR NAACGKHKEE ILCQLRELSK LEPNSSDDQD ETVPNIGFQY MEPAQNLQSG  240
PRGSGFMQKT EQHVVPSSEG SAFNWCGDSG EFADQGFSSS LADCFIETKC LFPNRDSDVC  300
DASGRANEEQ SHNPPTTETF QMVPKVAHRE LNSQERETAV SRYKEKKKTR RYEKHIRYES  360
RKARAESRTR IKGRFAKMDY RDSSVHQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	2e-81	CO-like family protein