PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT38253.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 546aa MW: 60520.2 Da PI: 8.1891

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT38253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.6	5.3e-33	216	273	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+ d++++ei+Y+g+Hnh+k PHT38253.1 216 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERNL-DGHITEIVYKGSHNHPK 273 8**************************************.*************85 PP
2	WRKY	106.1	1.8e-33	380	438	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d+++v++tYeg+Hnh+ PHT38253.1 380 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCPVRKHVERASHDQRAVITTYEGKHNHD 438 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MASSGGNTNT FMNSFNSNYS FSSSQFMTSS FSDLLSDNND DNNNNRNWGF SYQRIMNSIN 60 KDEVPKFKSF PPSSLPMISS SSPASPSSYL AFPHSLSPSV LLDSPVLFNN SNTLPSPTTG 120 SFGNLNSKED NSRTSDFSFH SRPATSSSIF HSSAPRNSLD DLITRQQQTT EFSTAKIGVK 180 SEVAPIQSFS QENMQNNPAP IHYCQPSQYV REQKAEDGYN WRKYGQKQVK GSENPRSYYK 240 CTFPNCPTKK KVERNLDGHI TEIVYKGSHN HPKPQSTRRS SAQSIQNLAY SNLDITNQPN 300 AFLENAQRDS LAVTDNSSAS FGDEDVDQGS PISKSGENDE NEPEAKRWKG DNENEVISSA 360 SRTVREPRIV VQTTSDIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTFTG CPVRKHVERA 420 SHDQRAVITT YEGKHNHDVP AARGSGSYSM NKPPSGSNNN MPAVPRPSLL ANNSNQGMNV 480 SNTLFNTAQV EPPITLQMLQ SSGSSSYSGF GTSSGSYMNQ MQPTNNSKLI SKEEPKDDLF 540 FSSFLN

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MASSGGNTNT FMNSFNSNYS FSSSQFMTSS FSDLLSDNND DNNNNRNWGF SYQRIMNSIN  60
KDEVPKFKSF PPSSLPMISS SSPASPSSYL AFPHSLSPSV LLDSPVLFNN SNTLPSPTTG  120
SFGNLNSKED NSRTSDFSFH SRPATSSSIF HSSAPRNSLD DLITRQQQTT EFSTAKIGVK  180
SEVAPIQSFS QENMQNNPAP IHYCQPSQYV REQKAEDGYN WRKYGQKQVK GSENPRSYYK  240
CTFPNCPTKK KVERNLDGHI TEIVYKGSHN HPKPQSTRRS SAQSIQNLAY SNLDITNQPN  300
AFLENAQRDS LAVTDNSSAS FGDEDVDQGS PISKSGENDE NEPEAKRWKG DNENEVISSA  360
SRTVREPRIV VQTTSDIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTFTG CPVRKHVERA  420
SHDQRAVITT YEGKHNHDVP AARGSGSYSM NKPPSGSNNN MPAVPRPSLL ANNSNQGMNV  480
SNTLFNTAQV EPPITLQMLQ SSGSSSYSGF GTSSGSYMNQ MQPTNNSKLI SKEEPKDDLF  540
FSSFLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-117	WRKY family protein