PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT37882.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 518aa    MW: 57627.1 Da    PI: 6.677
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT37882.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.71.9e-1061585131374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 l++lLlecA a+s ++l +a+++L +l ++asp+g +  +R++ayf++A+a+r+ +s+ ++++ l   ++       + +a+++f+++sP++kf+h+t 
  PHT37882.1 158 LITLLLECAVALSVDNLGEAHRMLLELTQMASPYGtSCAERVVAYFAKAMASRVINSWLGICSPLINYKS-------VHSAFQVFNNISPFIKFAHFTS 249
                 5789*******************************6678**********************986644443.......56899***************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 NqaIlea+++ +rvHiiD di+qGlQWpaL++ La+R egpp++ +Tg+g     s e l etg++L++fA++lg++fef++ +  ++ +++++++++ 
  PHT37882.1 250 NQAILEAFHRRDRVHIIDVDIMQGLQWPALFHILATRMEGPPHVTMTGMGT----SMEILIETGKQLSNFAKRLGMSFEFHP-IGGKTGEIDISMFKIT 343
                 ***************************************************....***************************.6999************ PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 +gEa+a+++v   h+l+d +++  +    +++l+++lsP+vv++veqe+ + ++ Fl+rf+ +l+yys++fdsl a l ++++ r++vE+ ll  ei n
  PHT37882.1 344 RGEAIAIHWVQ--HSLYDATGPDWK----TMRLLQELSPRVVTLVEQEIAL-GGCFLDRFVGSLHYYSTVFDSLGAFLQSDDSSRHSVEHGLLYGEINN 435
                 **********9..99*999999888....**********************.789******************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++a  g +r+ +  ++++Wr+ l++ GF +vp+s++ ++qa+l+l++++  +gy++   +g+l lgWkd +L+++SaW+
  PHT37882.1 436 ILAIGGPARNGE-DKFRHWRSELSKNGFMQVPMSTNSMAQAQLILNMFPpAHGYTLVRGDGTLRLGWKDTSLFTASAWT 513
                 ********7665.55***************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    
MMKGGSGVLH QHGPLDHSIT QQSNEQWDCA SLGFSGISSA PNTSESRANN PERNELSQWV  60
EQVTRQLIED LPENETGVGL QANSTGTSTY QENIVPSLLG ELRPKKIARR NSSECIGHHH  120
HHQWSSHDDH LARDDNNRNR NETIAKGLNG LDDQGLNLIT LLLECAVALS VDNLGEAHRM  180
LLELTQMASP YGTSCAERVV AYFAKAMASR VINSWLGICS PLINYKSVHS AFQVFNNISP  240
FIKFAHFTSN QAILEAFHRR DRVHIIDVDI MQGLQWPALF HILATRMEGP PHVTMTGMGT  300
SMEILIETGK QLSNFAKRLG MSFEFHPIGG KTGEIDISMF KITRGEAIAI HWVQHSLYDA  360
TGPDWKTMRL LQELSPRVVT LVEQEIALGG CFLDRFVGSL HYYSTVFDSL GAFLQSDDSS  420
RHSVEHGLLY GEINNILAIG GPARNGEDKF RHWRSELSKN GFMQVPMSTN SMAQAQLILN  480
MFPPAHGYTL VRGDGTLRLG WKDTSLFTAS AWTSPNSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-142GRAS family protein