PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT37842.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 515aa MW: 55578.2 Da PI: 6.4298

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT37842.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.7	2.8e-17	125	211	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea+ e+ +l+rg+l++ +We+v++ + r ++ ++s +qCk+k +nl+kryk ++++++++ + s++p+f+q+e PHT37842.1 125 EWSDTGIACLLEAYMEKFVQLNRGNLRGRDWEDVAAMVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GIAMSHWPWFKQME 211 5***********************************767778899********************99.556669*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MASCDDDFSL LDNAAAANPA YHHQQPPFSA VRYKPLPPIS AVSPKNISGD DDENDDGDGS 60 YHIGVDPYEN DSNPFENSEK RTDREEISDN GTPYNNNNNS YKRSKISSSS SGGGGSGEYR 120 KDREEWSDTG IACLLEAYME KFVQLNRGNL RGRDWEDVAA MVSERCEKQS KSVEQCKNKV 180 DNLKKRYKLE RHRMSNGGIA MSHWPWFKQM EQIVGNLVAV KGGGGVSEED KAIVVMSGSS 240 SGRQSKRYGT AVAGPSGQIV KSKSSIGPRW RRVVLKISGA ALAGTTPNTN DPNNIDPKVA 300 MLVAQEVSIA CRLGIEVAIV VGGRNFFCGD TWVTSTGLDR CTAYQIGMMA TVMNSILLQS 360 ALEKAGVQTR VQSAFSMPEL AEPYSRQRAM RHLEKGRVVI FGGIGAGTGN PLFSTDTAAA 420 LRASEIHADA LLKGINANGV YICDSRNNNV AAEHISFRDL VSGGDSSPLD LMAVTLCEEN 480 AIPVVVFNLH GPGNISRALC GEQVGTLIDQ TGRVS

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MASCDDDFSL LDNAAAANPA YHHQQPPFSA VRYKPLPPIS AVSPKNISGD DDENDDGDGS  60
YHIGVDPYEN DSNPFENSEK RTDREEISDN GTPYNNNNNS YKRSKISSSS SGGGGSGEYR  120
KDREEWSDTG IACLLEAYME KFVQLNRGNL RGRDWEDVAA MVSERCEKQS KSVEQCKNKV  180
DNLKKRYKLE RHRMSNGGIA MSHWPWFKQM EQIVGNLVAV KGGGGVSEED KAIVVMSGSS  240
SGRQSKRYGT AVAGPSGQIV KSKSSIGPRW RRVVLKISGA ALAGTTPNTN DPNNIDPKVA  300
MLVAQEVSIA CRLGIEVAIV VGGRNFFCGD TWVTSTGLDR CTAYQIGMMA TVMNSILLQS  360
ALEKAGVQTR VQSAFSMPEL AEPYSRQRAM RHLEKGRVVI FGGIGAGTGN PLFSTDTAAA  420
LRASEIHADA LLKGINANGV YICDSRNNNV AAEHISFRDL VSGGDSSPLD LMAVTLCEEN  480
AIPVVVFNLH GPGNISRALC GEQVGTLIDQ TGRVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein