PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT37840.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 443aa MW: 50903.4 Da PI: 6.3439

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT37840.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.8	1.8e-15	134	187	34	86
trihelix 34 vskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +++ ++ PHT37840.1 134 VSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQCLLETMD 187 8*************************************5599999999999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MDSGSLYSNI GGPGMLGLEM SLHHQIPQQN PHHQHHMHPQ PPPHHPIVSF AHHQENGDNQ 60 QVLRQGFPFG NNNNKGKNQS LSFSDDEEPV PSADNNSTDD GNRTNSNNKT CPWQRMKWTD 120 NMVKLLIMVV YYIVSRAMME RGFYVSPQQC EDKFNDLNKR YKRVNDILGK GTACRVVENQ 180 CLLETMDHLS PKMKEEVKKL LNSKHLFFRE MCAYHNSCGH NNAAGAGAGG ASGSSVVAEA 240 ANSQAQKRCL HSSENANARI GASSLVKVAT GENDDDEEDD EDEEDDDDEV SGARGHDHDD 300 HHHHEDDDDI DERSRKRQRK LGTSSPMVQQ LSTELANVVQ DRERSPLEKR QWMKTRMMQL 360 EEQHVGYMYQ TFELQKQRLK WEKFISKKER EMEREKLMNE RKKLENERMV LLLKQKELEL 420 LDFLQYHPNN NNHRNSDPSS VTG

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MDSGSLYSNI GGPGMLGLEM SLHHQIPQQN PHHQHHMHPQ PPPHHPIVSF AHHQENGDNQ  60
QVLRQGFPFG NNNNKGKNQS LSFSDDEEPV PSADNNSTDD GNRTNSNNKT CPWQRMKWTD  120
NMVKLLIMVV YYIVSRAMME RGFYVSPQQC EDKFNDLNKR YKRVNDILGK GTACRVVENQ  180
CLLETMDHLS PKMKEEVKKL LNSKHLFFRE MCAYHNSCGH NNAAGAGAGG ASGSSVVAEA  240
ANSQAQKRCL HSSENANARI GASSLVKVAT GENDDDEEDD EDEEDDDDEV SGARGHDHDD  300
HHHHEDDDDI DERSRKRQRK LGTSSPMVQQ LSTELANVVQ DRERSPLEKR QWMKTRMMQL  360
EEQHVGYMYQ TFELQKQRLK WEKFISKKER EMEREKLMNE RKKLENERMV LLLKQKELEL  420
LDFLQYHPNN NNHRNSDPSS VTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	4e-56	Trihelix family protein