PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT37573.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 296aa MW: 33085.9 Da PI: 7.6906

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT37573.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	113	135	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H PHT37573.1 113 YQCKTCNRSFPSFQALGGHRASH 135 9***********99999998887 PP
2	zf-C2H2	13.2	0.00026	195	217	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H PHT37573.1 195 HECSICGAEFNSGQALGGHMRRH 217 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MIKMEAHQEN DHQLNIVIKR RRTKRPRPPS PLTLAITTSS CSTVEGASGG ELVDGHVANS 60 LSCVSKCTGG MDDQIVRNTN QEEEDMANCL ILLAQGHNFQ KSSTQSPMTL DVYQCKTCNR 120 SFPSFQALGG HRASHKKPKP LDDQVRNLKS IDHQVLVDNR SKLNDEDHVT TLSLQIPNSN 180 TITTTSTNKN KNRVHECSIC GAEFNSGQAL GGHMRRHRPL PNSIAITSNP NHTEESHHHH 240 HHHHDQQIKN TRTFLSLDLN LPAPEDDHRP ENSKFTFASK EQVIVFSASP LVDCHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	28	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	2e-49	C2H2 family protein