PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT37523.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 487aa MW: 54234 Da PI: 9.7931

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT37523.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.9	4.9e-25	264	308	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e+ PHT37523.1 264 DPEPGRCRRTDGKKWRCSRDVVSGHKYCERHVHRGRNRSRKPVET 308 79****************************************996 PP
2	QLQ	48.2	3.3e-17	198	234	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+yK+++a++PvP eLl i+k PHT37523.1 198 SYFSLAQWQELELQALVYKHMLAGAPVPNELLHLIKK 234 79******************************98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MKVAEMRMLR WMCGLTRGDR ARNETIREKI GVENKMREVR LRWFGHVMRR GMNAPVRRCE 60 KLALDGFRRG RGRLKNYWGQ DPMKLVAVTP PPPNPIIDFN LKQWRNEQKN ESSSEEVKNT 120 AKLPRLVLDL DSSYFSSCYP HSSSATTGFS VSCSDNTDTS VLPLFVSEPP TNNKLSAFPL 180 SPDSTVLTAT KLPRMESSYF SLAQWQELEL QALVYKHMLA GAPVPNELLH LIKKSLINSS 240 PYYNLPQQYH HYQQACYWGR TNMDPEPGRC RRTDGKKWRC SRDVVSGHKY CERHVHRGRN 300 RSRKPVETTT TAAPRVGNAA ASNRGSGEAL RVNPAMVNQG GVAPQFTLSG HAASTDLLHL 360 NQRPMEGQND GGSNGQILLH FFDDWPRQQL EENDNAGSMA SATSLSISMP GNPSSDVSLK 420 LSTGDRHNSD VRFSNVERST WGTNHVASMG GGPLAEALRS SMSNSSPTSV LHHLTHGNTS 480 DASCVST

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MKVAEMRMLR WMCGLTRGDR ARNETIREKI GVENKMREVR LRWFGHVMRR GMNAPVRRCE  60
KLALDGFRRG RGRLKNYWGQ DPMKLVAVTP PPPNPIIDFN LKQWRNEQKN ESSSEEVKNT  120
AKLPRLVLDL DSSYFSSCYP HSSSATTGFS VSCSDNTDTS VLPLFVSEPP TNNKLSAFPL  180
SPDSTVLTAT KLPRMESSYF SLAQWQELEL QALVYKHMLA GAPVPNELLH LIKKSLINSS  240
PYYNLPQQYH HYQQACYWGR TNMDPEPGRC RRTDGKKWRC SRDVVSGHKY CERHVHRGRN  300
RSRKPVETTT TAAPRVGNAA ASNRGSGEAL RVNPAMVNQG GVAPQFTLSG HAASTDLLHL  360
NQRPMEGQND GGSNGQILLH FFDDWPRQQL EENDNAGSMA SATSLSISMP GNPSSDVSLK  420
LSTGDRHNSD VRFSNVERST WGTNHVASMG GGPLAEALRS SMSNSSPTSV LHHLTHGNTS  480
DASCVST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	9e-68	GRF family protein