PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT37265.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 723aa MW: 78484.6 Da PI: 6.2365

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT37265.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	300	320	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg PHT37265.1 300 PCPEFRK-GACRRGDMCEYAHG 320 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MNVNHLTVET EDTLASLLEF AANNDIDAFK RWIEHDLSSV HEVGLWYGRQ KGSKQMVLEH 60 RTPLMVAAMY GSIDVLKLIL SLSGVDVNHS CGRDDSTALH CAASGGSLNA VDAVKLLVEA 120 GADPNFKDAN GHRPLDAIVT NPKVHTVKPC LENLLKTDAM GDCNPRVSMA SSNSNSPPLS 180 PSLGNRSPSS PSDTTSSPGS EKCTDLPVPS PSDTTSSPGS EKCTDLPVPS PSEKKEYPID 240 PSLPDIKNSI YSTDEFRMFS FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP 300 CPEFRKGACR RGDMCEYAHG VFECWLHPAQ YRTRLCKDST QCDRRVCFFA HTQEELRPLY 360 VSTGSAVLSP RSNTSAANAI DFAAAMGLIP GSPSSVSVMS PSAFTPPMSP SANGVSNMGW 420 PPQNVPALHL PGSNLQSSRL RSSLNARDIP AKDLTMLSDF DVEQQQLLNG LPCLSQSSMS 480 PNSFNRSVRP KTLTPSNLED LFSAEGSSPR YSDQALAQAV FSPTHKSAVF NQFHQQQQAM 540 LSPINTKFSP RNVDNPLLQG SFGVPSSRSM SPRGMEPISP MSSRVSILSQ GDKQHQFRSL 600 SSRDLGSSAA SAIAGSPSDT WPNWGIASGE PDWAVCNEEF GRLRRSSSFE LANNGEEPDL 660 SWVQSLVKES PQEATEKSAS RVSGITGSGA DISEGSTSGS QSEQYDQLGA WMEQMKLDQL 720 IAR

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MNVNHLTVET EDTLASLLEF AANNDIDAFK RWIEHDLSSV HEVGLWYGRQ KGSKQMVLEH  60
RTPLMVAAMY GSIDVLKLIL SLSGVDVNHS CGRDDSTALH CAASGGSLNA VDAVKLLVEA  120
GADPNFKDAN GHRPLDAIVT NPKVHTVKPC LENLLKTDAM GDCNPRVSMA SSNSNSPPLS  180
PSLGNRSPSS PSDTTSSPGS EKCTDLPVPS PSDTTSSPGS EKCTDLPVPS PSEKKEYPID  240
PSLPDIKNSI YSTDEFRMFS FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP  300
CPEFRKGACR RGDMCEYAHG VFECWLHPAQ YRTRLCKDST QCDRRVCFFA HTQEELRPLY  360
VSTGSAVLSP RSNTSAANAI DFAAAMGLIP GSPSSVSVMS PSAFTPPMSP SANGVSNMGW  420
PPQNVPALHL PGSNLQSSRL RSSLNARDIP AKDLTMLSDF DVEQQQLLNG LPCLSQSSMS  480
PNSFNRSVRP KTLTPSNLED LFSAEGSSPR YSDQALAQAV FSPTHKSAVF NQFHQQQQAM  540
LSPINTKFSP RNVDNPLLQG SFGVPSSRSM SPRGMEPISP MSSRVSILSQ GDKQHQFRSL  600
SSRDLGSSAA SAIAGSPSDT WPNWGIASGE PDWAVCNEEF GRLRRSSSFE LANNGEEPDL  660
SWVQSLVKES PQEATEKSAS RVSGITGSGA DISEGSTSGS QSEQYDQLGA WMEQMKLDQL  720
IAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein