PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT36718.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 384aa MW: 42123.6 Da PI: 9.0166

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT36718.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	80.5	1.5e-25	153	196	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrgrsrsrk++e PHT36718.1 153 DPEPGRCRRTDGKKWRCSRDVVVGQKYCERHVHRGRSRSRKPVE 196 79***************************************987 PP
2	QLQ	40.3	9.7e-15	79	113	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +F+ aQ+q+L+ Q l++++++a++ vPpeLl ++ PHT36718.1 79 YFSLAQWQELELQTLIFRHFIAGASVPPELLHLVK 113 7*****************************98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MDFNLKQQDD ESLTTTHHHH PAKLPKLVLD FQSVVSASTD SALPLFVSQP TSTTTTTNKL 60 LSDSTTTATT KFTRIGSGYF SLAQWQELEL QTLIFRHFIA GASVPPELLH LVKKSIITSS 120 PPSYYYSHPF QQYPPHYHQA LMQSGYWGRG AMDPEPGRCR RTDGKKWRCS RDVVVGQKYC 180 ERHVHRGRSR SRKPVEIPTP ANNGSKNNNN NTVFHHQAFE QMASHAPHFS LSGHSPSADA 240 ALHLNQRPLE STKKGPPVEA QKDDGKSSNG QILRHFFDDW PRQQLQEGDN AATSLSISMP 300 GGGVGGGNPS SDFSLKLSTG NDYDSGPHHV SNVERSTWGT SHQVASMGGP LAEALRSSTT 360 NSSPTSVLHQ LARGTTSDAS YIST

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MDFNLKQQDD ESLTTTHHHH PAKLPKLVLD FQSVVSASTD SALPLFVSQP TSTTTTTNKL  60
LSDSTTTATT KFTRIGSGYF SLAQWQELEL QTLIFRHFIA GASVPPELLH LVKKSIITSS  120
PPSYYYSHPF QQYPPHYHQA LMQSGYWGRG AMDPEPGRCR RTDGKKWRCS RDVVVGQKYC  180
ERHVHRGRSR SRKPVEIPTP ANNGSKNNNN NTVFHHQAFE QMASHAPHFS LSGHSPSADA  240
ALHLNQRPLE STKKGPPVEA QKDDGKSSNG QILRHFFDDW PRQQLQEGDN AATSLSISMP  300
GGGVGGGNPS SDFSLKLSTG NDYDSGPHHV SNVERSTWGT SHQVASMGGP LAEALRSSTT  360
NSSPTSVLHQ LARGTTSDAS YIST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	3e-65	GRF family protein