PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT36459.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 684aa    MW: 76653.8 Da    PI: 6.1032
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT36459.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.3e-24118219199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++pk +a+++         ++ +   l+++d +g+ We+++i+r+k++r++lt+GW++Fv++++L +gD++vF   ++++++l
  PHT36459.1 118 FAKTLTQSDANNGGGFSVPKYCADTIfpllnyaADPPVQ--NLSVKDVHGKPWEFRHIFRGKPRRHLLTTGWSNFVNEKKLVAGDSIVFL--RSENGKL 212
                 89*********************999*****97666666..6************************************************..4589999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  PHT36459.1 213 CVGIRRA 219
                 *****97 PP
2Auxin_resp99.54.5e-33286368183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a++k +Fev+++P +s++eF vk+++v++al+++++ GmRfkm feteds    ++Gt+++v+ +dp rWp+S+Wr L+
  PHT36459.1 286 AANLAASKYPFEVTFYPHSSNPEFFVKASRVKAALQIPWCSGMRFKMPFETEDSMMSWFMGTISSVQVADPHRWPDSPWRILQ 368
                 7899****************************************************999**********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    
MITFMDSRVE EEKCLDSQLW HACAGTMVKM PAVNSTVFYF PQGHAEHACA NVEFGNDIRI  60
PSYIPCRVSA ITYMAEQVTD EVFAKIRLTP ISHNEVDQIV DDEIAKIGLD NPDKFPSFAK  120
TLTQSDANNG GGFSVPKYCA DTIFPLLNYA ADPPVQNLSV KDVHGKPWEF RHIFRGKPRR  180
HLLTTGWSNF VNEKKLVAGD SIVFLRSENG KLCVGIRRAK KGIGNGPETP FQCIPPIDNF  240
FIPPIDNSAL LKDDENKLMR YENTNSNDEI NLMNKGKVKA ESVIEAANLA ASKYPFEVTF  300
YPHSSNPEFF VKASRVKAAL QIPWCSGMRF KMPFETEDSM MSWFMGTISS VQVADPHRWP  360
DSPWRILQVT WDEPDLLQNV KCVNPWLVEL VSNMSTIHFN PYAPPLQLPQ RSDFPHLPMP  420
GLIRPSDFFN CLPNDTHVGM QGARHAQYNL SLPDLHLDRL YSSLSHVGFP PPHHVIASPR  480
TSNSTTIPNP SISDDISCLL TLGGSSQTMN KSDCEKVPQF KLFGQLIRTE QQISQSSSGD  540
TGSPIRAVNS SLHGHGYKKG NISEESGTSF DHCSLPDHLP CESFQSEKNL EMGHCEVFIE  600
SEDVGRTLDL SLLDSYEELY MDLSNMSGIK ISDMLNHVIY RDINGATKQL GDEPFREFTK  660
TSRRLTILTD ARSNNIGVTS RDNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein