PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT36306.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 545aa MW: 60029.2 Da PI: 8.4191

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT36306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.6e-16	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l PHT36306.1 59 KGGWTPEEDDTLRSAVAAYRGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	56.5	6.4e-18	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G+ W+ Ia+ + gR +kqc++rw+++l PHT36306.1 111 KGPWTQEEDDKIIELVARYGPTKWSIIAKSLH-GRIGKQCRERWHNHL 157 79****************************.***********97 PP
3	Myb_DNA-binding	58.2	1.9e-18	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ lvda++ +G++ W+ Ia+ ++ gRt++ +k++w++ PHT36306.1 163 KDAWTLEEELALVDAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MDGLRVEDCC TENKQSTAAS ASSVSENSGG VTVKSSEVSS PTPASPVHRR TTGPIRRAKG 60 GWTPEEDDTL RSAVAAYRGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD 120 KIIELVARYG PTKWSIIAKS LHGRIGKQCR ERWHNHLNPN IKKDAWTLEE ELALVDAHRI 180 HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGN LPPVGRDGPQ NGCENNIFTA 240 SAEKALVYSH KGSDSTELAS SGTTDICKIG NGGMNHQDAK LLVANIDASN SGPQNESTDS 300 EVVRWEAQSP AIDGIHVKPI TKIKFDGYGT NSVVDLKVIE TPFSCEIPTC GTLYYEPPQL 360 GSCISMDSNY LNIRWAHSGP SPSLSPSSFS TPPSCLKGSS YAQTPESILE TAARSFPNTP 420 SIFRKRRLSS TPGNKIGNAD EDMRKEEPCD TCEEKQVDSS EKYGMNRGSS SRNPAYNGIG 480 PCNTRAFNAS PPYRLRSKRK SIFKSVEKKL KFAFDNEQHN TSNDSTIKEI SHVADCLRAT 540 KMGIT

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MDGLRVEDCC TENKQSTAAS ASSVSENSGG VTVKSSEVSS PTPASPVHRR TTGPIRRAKG  60
GWTPEEDDTL RSAVAAYRGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD  120
KIIELVARYG PTKWSIIAKS LHGRIGKQCR ERWHNHLNPN IKKDAWTLEE ELALVDAHRI  180
HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGN LPPVGRDGPQ NGCENNIFTA  240
SAEKALVYSH KGSDSTELAS SGTTDICKIG NGGMNHQDAK LLVANIDASN SGPQNESTDS  300
EVVRWEAQSP AIDGIHVKPI TKIKFDGYGT NSVVDLKVIE TPFSCEIPTC GTLYYEPPQL  360
GSCISMDSNY LNIRWAHSGP SPSLSPSSFS TPPSCLKGSS YAQTPESILE TAARSFPNTP  420
SIFRKRRLSS TPGNKIGNAD EDMRKEEPCD TCEEKQVDSS EKYGMNRGSS SRNPAYNGIG  480
PCNTRAFNAS PPYRLRSKRK SIFKSVEKKL KFAFDNEQHN TSNDSTIKEI SHVADCLRAT  540
KMGIT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	498	511	KRKSIFKSVEKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-145	MYB family protein