PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT36060.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 367aa MW: 43066.1 Da PI: 10.2414

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT36060.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.7	3.1e-09	204	240	1	41
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 r rWT+eE+ ++++a k++G W +I ++ ++c+ PHT36060.1 204 RERWTEEEHNRFLEALKLYGRA-WQRIEGELE---HSEECR 240 78****************88.**98887...344555 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MTVEELIVRL RLEEDNKAAE RRSKGNSTIN EAHIVEDDQN NSKKRKKTEQ GSNQPKKKFK 60 GKCFKCGKIG HKSTDCRAPK KGKKKDQANM IESNKECDDL CAMFSECNLT RNPRECQNSE 120 EWSLPERPQL VLRAATHNSR IVASSSVIVQ TKISPAVYGS INCSTAGLMF RNHAVRFGEQ 180 FWIRNFLSTT SMLTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE GELEHSEECR 240 EFSYCRRFRV EEVREAVRRM RRGRATGPDE IPVEFWKYVG EAGVGVAPVE CKMREVRLSW 300 FGHVKRRDTD APVRRCERLA MDGFRRGRGR PKKYWGEVIR RDMEQLQLTE DMTLDRKVWR 360 ARIRAEN

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MTVEELIVRL RLEEDNKAAE RRSKGNSTIN EAHIVEDDQN NSKKRKKTEQ GSNQPKKKFK  60
GKCFKCGKIG HKSTDCRAPK KGKKKDQANM IESNKECDDL CAMFSECNLT RNPRECQNSE  120
EWSLPERPQL VLRAATHNSR IVASSSVIVQ TKISPAVYGS INCSTAGLMF RNHAVRFGEQ  180
FWIRNFLSTT SMLTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE GELEHSEECR  240
EFSYCRRFRV EEVREAVRRM RRGRATGPDE IPVEFWKYVG EAGVGVAPVE CKMREVRLSW  300
FGHVKRRDTD APVRRCERLA MDGFRRGRGR PKKYWGEVIR RDMEQLQLTE DMTLDRKVWR  360
ARIRAEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	43	47	KKRKK
2	43	84	KKRKKTEQGSNQPKKKFKGKCFKCGKIGHKSTDCRAPKKGKK
3	44	85	KKRKKTEQGSNQPKKKFKGKCFKCGKIGHKSTDCRAPKKGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46830.1	9e-18	MYB_related family protein