PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT35348.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 995aa MW: 109723 Da PI: 4.8808

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT35348.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.1	1e-18	45	89	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEde+l +av+q+ g++Wk+Ia+++ Rt+ qc +rwqk+l PHT35348.1 45 KWTPEEDEILRQAVQQFKGKSWKKIAECFK-DRTDVQCLHRWQKVL 89 8**************************9.**********986 PP
2	Myb_DNA-binding	55.5	1.3e-17	95	141	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+++v+ +G+ W+ Ia+++ gR +kqc++rw+++l PHT35348.1 95 KGSWSKEEDDKLIELVNIHGPQKWSNIAQELA-GRIGKQCRERWHNHL 141 799***************************.***********97 PP
3	Myb_DNA-binding	54.5	2.7e-17	147	189	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ lv+a++ +G++ W+ I+++++ gR+++ +k++w+ PHT35348.1 147 KEAWTEEEELTLVRAHQAYGNK-WAEISKYLP-GRSDNAIKNHWH 189 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 995 aa Download sequence
MLDYQDLSLT QATMESDETS KPPSDDISSR PLHGRTSGPK RRSVKWTPEE DEILRQAVQQ 60 FKGKSWKKIA ECFKDRTDVQ CLHRWQKVLD PELVKGSWSK EEDDKLIELV NIHGPQKWSN 120 IAQELAGRIG KQCRERWHNH LNPEIKKEAW TEEEELTLVR AHQAYGNKWA EISKYLPGRS 180 DNAIKNHWHS SVKKKLASGL LAQSPALPNV NHQNQSIASS SMKLQETSED ESVHKEGAEV 240 EEVRECSQGS TLAGCPQSTS DLGNTFMHIR ENDAMLEESI HKKDASSGAA PCPRNSASAF 300 QDVSCSMLNV PSDLVDSKFL EYMFSHEGDN STERDWQFNM DDFPGFIEES SGHYMHCSND 360 NENHAMVADP LLTAMGSGAT SNAANMVEGP YKPNEMFDGC RIMYPEAAIS QCSPSETGVN 420 GTGEPADCLI YQSSNYQIPE EGNMAPPNCN ALSFDDVEAS THQQFSVPSH FSSEDRSLVF 480 GIASDQFHYP PLENSVLESF TSRCDDFICP SEFGSPSNDN GIDNAVLKDL PDHTKDSSRL 540 EEQKDGGALC YEPPRFPSLD VPFLYCDLIQ SGSNTQQEYS PLGIRHLMMS PANCLTPLRL 600 WNSPSGDDSP NAILKSAAKT FTGTPSIVKK RQRHLVSPLS EKRCEKKLES DLNQESFSNM 660 ATELSRVGDM FNESANEKAS TEDKENLHPS SEDGRKEQGD GVTGLSCIEN SERQLGGGGA 720 HYHKDPHSES AGANDALGKV KQLPGVLVDR SSNDMLVSPD RFLIKCDRAT SLSNKALNNQ 780 YAGQLEAASN QVNVSSSFET SFLSVFCSPD ILGKCRSSVV KATSMQSTTS TALVNTAENS 840 EKGFGAETSN IFGEAPLKRS TESPSAWKSP WSLNSFLPSP RYDTELTFED FAPFMSPGER 900 SYDAIGLMKQ LSEQTAPSIA VARQILGSET PETILSKRTK QQKADEDCAL LASNAMSERR 960 TLDFSECGTP PRKGKETTKF GSVSSPSSYL LKCCR

Sequence ? help Back to Top

Protein Sequence Length: 995 aa Download sequence

MLDYQDLSLT QATMESDETS KPPSDDISSR PLHGRTSGPK RRSVKWTPEE DEILRQAVQQ  60
FKGKSWKKIA ECFKDRTDVQ CLHRWQKVLD PELVKGSWSK EEDDKLIELV NIHGPQKWSN  120
IAQELAGRIG KQCRERWHNH LNPEIKKEAW TEEEELTLVR AHQAYGNKWA EISKYLPGRS  180
DNAIKNHWHS SVKKKLASGL LAQSPALPNV NHQNQSIASS SMKLQETSED ESVHKEGAEV  240
EEVRECSQGS TLAGCPQSTS DLGNTFMHIR ENDAMLEESI HKKDASSGAA PCPRNSASAF  300
QDVSCSMLNV PSDLVDSKFL EYMFSHEGDN STERDWQFNM DDFPGFIEES SGHYMHCSND  360
NENHAMVADP LLTAMGSGAT SNAANMVEGP YKPNEMFDGC RIMYPEAAIS QCSPSETGVN  420
GTGEPADCLI YQSSNYQIPE EGNMAPPNCN ALSFDDVEAS THQQFSVPSH FSSEDRSLVF  480
GIASDQFHYP PLENSVLESF TSRCDDFICP SEFGSPSNDN GIDNAVLKDL PDHTKDSSRL  540
EEQKDGGALC YEPPRFPSLD VPFLYCDLIQ SGSNTQQEYS PLGIRHLMMS PANCLTPLRL  600
WNSPSGDDSP NAILKSAAKT FTGTPSIVKK RQRHLVSPLS EKRCEKKLES DLNQESFSNM  660
ATELSRVGDM FNESANEKAS TEDKENLHPS SEDGRKEQGD GVTGLSCIEN SERQLGGGGA  720
HYHKDPHSES AGANDALGKV KQLPGVLVDR SSNDMLVSPD RFLIKCDRAT SLSNKALNNQ  780
YAGQLEAASN QVNVSSSFET SFLSVFCSPD ILGKCRSSVV KATSMQSTTS TALVNTAENS  840
EKGFGAETSN IFGEAPLKRS TESPSAWKSP WSLNSFLPSP RYDTELTFED FAPFMSPGER  900
SYDAIGLMKQ LSEQTAPSIA VARQILGSET PETILSKRTK QQKADEDCAL LASNAMSERR  960
TLDFSECGTP PRKGKETTKF GSVSSPSSYL LKCCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	1e-158	MYB family protein