PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT35172.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 210aa MW: 24196.8 Da PI: 10.1195 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.6e-05 | 76 | 96 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H PHT35172.1 76 CEICNKGFQRDQNLQLHRRGH 96 *******************88 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 151 | 173 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + PHT35172.1 151 WKCEKCSKKYAVQSDWKAHNKIC 173 58*****************8876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence |
MMSNDELSCS IRGGFTFIQD PKNPSSNTSH NPNPNPNPTA SSANKRKRNL PGNPDPDAEV 60 IALSPKSLMA TNRFLCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRNNKEL IKKKVYICPE 120 SSCVHHDPSR ALGDLTGIKK HYSRKHGEKK WKCEKCSKKY AVQSDWKAHN KICGTREYKC 180 DCGKLFSRYF IINLLLLIMR ILFNFSESYD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G45260.1 | 2e-84 | C2H2 family protein |