PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT35163.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 922aa MW: 101327 Da PI: 4.7676

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT35163.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.7	4.7e-09	130	157	1	27
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC++f+r+ C++G++C++aHg+ PHT35163.1 130 WKTALCSYFRRNEgSCNHGESCRYAHGE 157 8********867**********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 922 aa Download sequence
MSTETVNPKF NGNDSPEKLS SEFHGHDSSE KLSDEFNGKD SSEKLNAELN VQDSSEKLND 60 EFNGKDSSES PKPQLNVQDS SEQLNAKLNS EDISEKLNAE SNEQESSEKK VNLLAKRKRE 120 ETETHTNPLW KTALCSYFRR NEGSCNHGES CRYAHGESEL RIRPDNTWDP TSQRAKKIAR 180 VEFEEEEDEE QVKCNDVMMP DALDDDDGQR SSSSGLSKCL VNLPMKWNSD NLRCFLKEHG 240 VTYKSAKKKK GMSVGFVTLE NAEQVETAVK ELDGLPFRNK ILKVGDVVPR AFERKGNSAM 300 SSFPTNQHGE KQTQAGDGLD LTKILDETEA EDQTANDSVL MGRCVRDVVT PLAKMPYADQ 360 LEQKKSSLTR TLKTLTRNAR KACPDGVPLP EWILKARDIG GLPCNLEGIT ESPLVNGYRN 420 KCEFSVGYSV LGKPTVGFLP GNFREGVTAV EEPVDCPNVS EIACKYAAVF QEFLQQSTLP 480 IWNRLNNTGF WRQLTVREGR MPGENVEVEN PSANISEVML IVQVSTLDFD DALVNDEIQV 540 LAKAFAVGAS SASPTLPLTA LVVQDHTGIS NVAPADAPLR WLPFPGGEDS AVAEAKIHDF 600 VNGLKFCISP TAFFQVNTLA AEKLYSLAGD WASLGPDTLL FDICCGTGTI GLTLANRVGM 660 VVGIEMNASA VSDAQRNAEI NGIKNCRFIC GKAEDVIGSV LKEYLVSPPK VDGLQDIKEK 720 NNQENTISTG KTDCIVNASE ADEESGMCID PDSAPIVNMD STENTLEPEG KAGNRKSLSE 780 SSSDGIIESE TQLKNCSSEN LTTPVQHFKN VVAIVDPPRA GLHPTVIKLL RTNSRLRRLV 840 YISCNPETLV ANAIELCTPS PDETAKGDNR NNRLWRRMSS ATLARHRTKS MPSSEPFQPV 900 KAMAVDLFPH TPHCELVMLL ER

Sequence ? help Back to Top

Protein Sequence Length: 922 aa Download sequence

MSTETVNPKF NGNDSPEKLS SEFHGHDSSE KLSDEFNGKD SSEKLNAELN VQDSSEKLND  60
EFNGKDSSES PKPQLNVQDS SEQLNAKLNS EDISEKLNAE SNEQESSEKK VNLLAKRKRE  120
ETETHTNPLW KTALCSYFRR NEGSCNHGES CRYAHGESEL RIRPDNTWDP TSQRAKKIAR  180
VEFEEEEDEE QVKCNDVMMP DALDDDDGQR SSSSGLSKCL VNLPMKWNSD NLRCFLKEHG  240
VTYKSAKKKK GMSVGFVTLE NAEQVETAVK ELDGLPFRNK ILKVGDVVPR AFERKGNSAM  300
SSFPTNQHGE KQTQAGDGLD LTKILDETEA EDQTANDSVL MGRCVRDVVT PLAKMPYADQ  360
LEQKKSSLTR TLKTLTRNAR KACPDGVPLP EWILKARDIG GLPCNLEGIT ESPLVNGYRN  420
KCEFSVGYSV LGKPTVGFLP GNFREGVTAV EEPVDCPNVS EIACKYAAVF QEFLQQSTLP  480
IWNRLNNTGF WRQLTVREGR MPGENVEVEN PSANISEVML IVQVSTLDFD DALVNDEIQV  540
LAKAFAVGAS SASPTLPLTA LVVQDHTGIS NVAPADAPLR WLPFPGGEDS AVAEAKIHDF  600
VNGLKFCISP TAFFQVNTLA AEKLYSLAGD WASLGPDTLL FDICCGTGTI GLTLANRVGM  660
VVGIEMNASA VSDAQRNAEI NGIKNCRFIC GKAEDVIGSV LKEYLVSPPK VDGLQDIKEK  720
NNQENTISTG KTDCIVNASE ADEESGMCID PDSAPIVNMD STENTLEPEG KAGNRKSLSE  780
SSSDGIIESE TQLKNCSSEN LTTPVQHFKN VVAIVDPPRA GLHPTVIKLL RTNSRLRRLV  840
YISCNPETLV ANAIELCTPS PDETAKGDNR NNRLWRRMSS ATLARHRTKS MPSSEPFQPV  900
KAMAVDLFPH TPHCELVMLL ER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.1	0.0	C3H family protein