PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT34772.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 20820.9 Da PI: 10.2895 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.1 | 4.2e-17 | 15 | 56 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +n+ n tfskRr g++KK +ELS+LC++e+a ++fs++ PHT34772.1 15 MKNQNNIPATFSKRRDGLFKKVSELSTLCGVEIATVVFSPSK 56 68999999*******************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence |
MRKPTGRKKI KIEKMKNQNN IPATFSKRRD GLFKKVSELS TLCGVEIATV VFSPSKTSVY 60 SIGHPCVLSV VDKFLNPPPD TDSPQPLAKP YQNKDVTKME KLIEAEEKRA LRLQSTNTKG 120 SYLRLNHFQL QELSDTLEAK LKMTERVEIQ QKESGIPFSF KSYGYALAPR ENISSTSDVG 180 PSRSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-27 | M-type_MADS family protein |