PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT34760.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 454aa MW: 50140.1 Da PI: 7.4174

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT34760.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.6	5.6e-17	153	202	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PHT34760.1 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 202 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MMLDLNLSAI YDEKIPEGSV ADESEVGSSN SSARNAEACS SAGDDETCST RAAGSGDIFA 60 FNFNILKVGH GGDERNRSCC NNDDDHHHRS KYVTQQLFPV NTAELNTRAH TSQNADWIDR 120 STYDPANTVG FREMPKQQQP VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL 180 GGFDTAHAAA RAYDRAAIKF RGVDADINFN LSDYEEGMKQ MSNLSKEEFV HVLRRQSTGF 240 SRGSSKYRGV TLHKCGRWEA RMGQFLGKKA YDKAAIKCNG RDAVTNFEPS AYEGEPNSNP 300 QIEGSQQDLD LNLGIATSSP KEIERSSVFQ YHPYDMQEST KSQMDKSGSQ TVVSSHFKGL 360 PAVTSEQAHL WNGVYSNFFP SYEERASGKR IDVGTSHGHP NWAMQMHGQV GTTSMSMFSA 420 AASSGFSTPA TTASASVMSG PNNPNNLNLS FASY

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MMLDLNLSAI YDEKIPEGSV ADESEVGSSN SSARNAEACS SAGDDETCST RAAGSGDIFA  60
FNFNILKVGH GGDERNRSCC NNDDDHHHRS KYVTQQLFPV NTAELNTRAH TSQNADWIDR  120
STYDPANTVG FREMPKQQQP VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL  180
GGFDTAHAAA RAYDRAAIKF RGVDADINFN LSDYEEGMKQ MSNLSKEEFV HVLRRQSTGF  240
SRGSSKYRGV TLHKCGRWEA RMGQFLGKKA YDKAAIKCNG RDAVTNFEPS AYEGEPNSNP  300
QIEGSQQDLD LNLGIATSSP KEIERSSVFQ YHPYDMQEST KSQMDKSGSQ TVVSSHFKGL  360
PAVTSEQAHL WNGVYSNFFP SYEERASGKR IDVGTSHGHP NWAMQMHGQV GTTSMSMFSA  420
AASSGFSTPA TTASASVMSG PNNPNNLNLS FASY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	1e-103	AP2 family protein