PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT34711.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 905aa    MW: 102524 Da    PI: 5.5206
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT34711.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS284.62.8e-875359031374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilkfsh 95 
                 lv+lLl++Ae v++++++la++ +ar    as +g+p+qRl +yf eAL++r+ +   e+ ++ + +++ +        ++  al+  +   P+ ++ +
  PHT34711.1 535 LVHLLLAAAEEVDQQQFHLASQSIARCLWKASATGNPIQRLCFYFGEALQERIDQ---EIGRSPSFERKLRFLstlaLGTTPEALT-CHTEIPFSQVMQ 629
                 68****************************************************9...3333322222221111111333333333.55667******* PP

        GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                 ++  qaI+e ++g++++H +Df+   G+Q   L+qaLa +R+++   l+iT++g+   ++ke++eetg+rL++fA++l++pf+f ++ +++++dl+ e+
  PHT34711.1 630 FAGIQAIVENIKGATKIHLVDFNNRSGIQCTGLMQALAeQRDRPIELLKITAIGH---QEKEKIEETGKRLQSFANSLNLPFSFAMVFMSDMKDLRAES 725
                 **************************************66668888*********...579************************************** PP

        GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +vk++E +aV ++  l ++     + +++ +++++++++l+P vvvv+e ea+hns+sFl+rf+eal +y++lfd++e  + r++  r+ +E   +g+
  PHT34711.1 726 VNVKEDEIVAVYCSTVLRTMI----CRQDYLHNTMRVIRGLRPAVVVVCEIEANHNSPSFLNRFVEALFFYTVLFDCFEDCMDRDNLVRKRIEVLHIGE 820
                 *******************99....55555666****************************************************************** PP

        GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  i+n+v++egaer+ r+ +l+ Wr  + ++G+ ++++se+   qakl+l++++ +    v+++ ++l+ gWk+ p+ svS W+
  PHT34711.1 821 GIRNMVTAEGAERFTRNVKLHVWRPYFARFGMVEMEVSESSRYQAKLILEQFShGSSCIVQNDGKALLVGWKGTPIKSVSIWK 903
                 *****************************************************777788889999999**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 905 aa     Download sequence    
MDSSSELYQQ EEKKVISVCE YVANMLRESF QCLTVILLSL LLPLSFIVLA RLSVTQYLIA  60
MSSYTGPDTL LVRLYLYANP TLLHLLAPFV SISALSQCLT GRTLSDHMIT KPLVCASWFL  120
LFAFQICVCI GVEGSIAVGI DGTGFSRERL CLLTRSLFFL GLHETTLFWS KKVVKPVVDD  180
TVFGDGTEDR YVEKVAMAMS FGVLWWCKLR DEVESLVVVV EVKRDLIGNV DLVDFVGWWL  240
YYVTVAIGMV KVVKALVWLN FVLFCRNVVD SDLSCADSSL FMPHHPCRIL QKYTTFGESD  300
THPLTFLKNP SNIDSDNAGC CTRNDDKHFV SPGVQIMDSH EHLQECGRNE LINNSVIDPW  360
YELDSGDLES LYTVFDDKHH ENTSDKQFQL LEDQQQHISD NWTQSDDSSN MVLPLQPNQI  420
QATPEACNVV QPQLPRLGDF HDEKTNSISL ASLELLNNCG RLFKKSSEEN LSNVLGNEAR  480
VSNIPKLSTE EILRIAGERY IQYSTHRVDG LSMFIHPYAS SLTGLSIEQT KDMELVHLLL  540
AAAEEVDQQQ FHLASQSIAR CLWKASATGN PIQRLCFYFG EALQERIDQE IGRSPSFERK  600
LRFLSTLALG TTPEALTCHT EIPFSQVMQF AGIQAIVENI KGATKIHLVD FNNRSGIQCT  660
GLMQALAEQR DRPIELLKIT AIGHQEKEKI EETGKRLQSF ANSLNLPFSF AMVFMSDMKD  720
LRAESVNVKE DEIVAVYCST VLRTMICRQD YLHNTMRVIR GLRPAVVVVC EIEANHNSPS  780
FLNRFVEALF FYTVLFDCFE DCMDRDNLVR KRIEVLHIGE GIRNMVTAEG AERFTRNVKL  840
HVWRPYFARF GMVEMEVSES SRYQAKLILE QFSHGSSCIV QNDGKALLVG WKGTPIKSVS  900
IWKFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-42GRAS family protein