PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT34395.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YA
Protein Properties Length: 300aa    MW: 33027.4 Da    PI: 7.8002
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT34395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA95.27.5e-30168224158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQy+rIl+RRq+Rak+e ekk  +ksrkpylheSRh+hAlrR+R+sgGrF
  PHT34395.1 168 QEPVYVNAKQYRRILQRRQSRAKAELEKKQ-IKSRKPYLHESRHQHALRRARASGGRF 224
                 69************************9999.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MPSNSKIANR EETNAYNGPR STVYSEPWWN SAVYNPVSPG LMRENASDSS SLEQSVDGQS  60
QSDGGINEED DDAPEKSQSI VAFPADGSYG KVDQNFQPAA PAIPPRLDGS LAQPQQLELV  120
GHSIACAPIP YVDPYYGGMM TAFGQPLVPP HVLDMHYARM PLPQEMAQEP VYVNAKQYRR  180
ILQRRQSRAK AELEKKQIKS RKPYLHESRH QHALRRARAS GGRFAKKTDA SKGTGSVSSS  240
GSEALQFNAA DIRRRHENGR LADLQHSYSN GSSYGNQSSF QESKDEYQSA ESREGGVPGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.22e-55NF-YA family protein