PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT33971.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 476aa MW: 53309.5 Da PI: 6.5137

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT33971.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.6	3.4e-14	21	65	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd++l + ++ +G+++W+ Ia+++ +t qc+ rw++yl PHT33971.1 21 SWSQEEDDILREQIRIHGTDNWTIIASKFK-DKTTRQCRRRWFTYL 65 6**************************9.***********97 PP
2	Myb_DNA-binding	44.1	4.8e-14	71	114	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd ll +a k +G++ W+ Ia+ + gRt++ +k+r+ + PHT33971.1 71 KGGWSPEEDILLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFTT 114 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MQNAMKRSVE AAKTKERHIV SWSQEEDDIL REQIRIHGTD NWTIIASKFK DKTTRQCRRR 60 WFTYLNSDFK KGGWSPEEDI LLCEAQKIFG NRWTEIAKVV SGRTDNAVKN RFTTLCKKRA 120 KHEALAKENS NSYINLNNKR VIFPSGLNMD NITEATAPTK KLRRSGISDV LQIGNEGEKS 180 MGDCGTTNPL LRHPFAVLAQ NLHNAGENLA SHRRTTESGS DNKTQGTFLK KDDPKVHVLM 240 QQAELLSSLA MKVNTENTDQ SLENAWKILQ DFLQQTKDGD MLKFQLPEMN FEPGDYKNLI 300 ADSRSSNEGT QPSWRQPALS EDSAGSSEYS TGSTLLSHAL ADKTEESQAE VCAHHQDIES 360 ELRTSQMSDQ AGLHELENGI SCRVSTTQDT LPVCDEEKVN NGPATAECEF LNTDFSSPHQ 420 VTPLFRSLAA EIPTPKFSES ERQFLLKTLG VESTSLHPGT NLSQPPSCKR ALLHSL

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MQNAMKRSVE AAKTKERHIV SWSQEEDDIL REQIRIHGTD NWTIIASKFK DKTTRQCRRR  60
WFTYLNSDFK KGGWSPEEDI LLCEAQKIFG NRWTEIAKVV SGRTDNAVKN RFTTLCKKRA  120
KHEALAKENS NSYINLNNKR VIFPSGLNMD NITEATAPTK KLRRSGISDV LQIGNEGEKS  180
MGDCGTTNPL LRHPFAVLAQ NLHNAGENLA SHRRTTESGS DNKTQGTFLK KDDPKVHVLM  240
QQAELLSSLA MKVNTENTDQ SLENAWKILQ DFLQQTKDGD MLKFQLPEMN FEPGDYKNLI  300
ADSRSSNEGT QPSWRQPALS EDSAGSSEYS TGSTLLSHAL ADKTEESQAE VCAHHQDIES  360
ELRTSQMSDQ AGLHELENGI SCRVSTTQDT LPVCDEEKVN NGPATAECEF LNTDFSSPHQ  420
VTPLFRSLAA EIPTPKFSES ERQFLLKTLG VESTSLHPGT NLSQPPSCKR ALLHSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	1e-169	MYB family protein