PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT33622.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 545aa MW: 61241.9 Da PI: 6.8412

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT33622.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	478	500	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++F++ L H r+H PHT33622.1 478 HECPFCDRVFKSGQALGGHKRSH 500 78******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MEEDQDLKFV CKLCNKKYPC GKSLGGHMRS HVLNNSDEFE EKLESWSARE NSHQSKFDLG 60 GNSGYGLREN PKKTWRAVDS TSVNLLPQEK VCQQCGKVFQ SLKALCGHMA CHSEKLVVDS 120 HSDTETDDEE EEEEEAKLRN RLSSKTKRYK RIVVKSSNNY SLVNNNSNVN VNCNGSSSVS 180 EIDENDQEEV AKCLMMLSRD SANWNGVNSV VESSDNNSVV LETKSSSTDM RLGRKDRLKC 240 VDNQDEAPGT KKREERKVKL SGHLGGEAEY ESSDDSGYFL DENTIVESDI SVDGFHRNGN 300 SKWSTTRMSN AVWCDESRID KGKGLNRTKK YPIESRKDLN DDCGFDDYPI AAYMDKCEPR 360 KRTKDSSYHP ELGNKSFKKI KLGPKSPEGC KNVEKKKYEC LNCKKSFNSF QALGGHRPCH 420 KKANAYLESL NGTGESSLDA DCDDKHRETS SSKKTASAAK DLSYNPEKKI KLKKSKGHEC 480 PFCDRVFKSG QALGGHKRSH FIVGTEQNMN RSSAVKKDVD DLLDLNLPAP VDDEDDDEHA 540 HLVSW

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MEEDQDLKFV CKLCNKKYPC GKSLGGHMRS HVLNNSDEFE EKLESWSARE NSHQSKFDLG  60
GNSGYGLREN PKKTWRAVDS TSVNLLPQEK VCQQCGKVFQ SLKALCGHMA CHSEKLVVDS  120
HSDTETDDEE EEEEEAKLRN RLSSKTKRYK RIVVKSSNNY SLVNNNSNVN VNCNGSSSVS  180
EIDENDQEEV AKCLMMLSRD SANWNGVNSV VESSDNNSVV LETKSSSTDM RLGRKDRLKC  240
VDNQDEAPGT KKREERKVKL SGHLGGEAEY ESSDDSGYFL DENTIVESDI SVDGFHRNGN  300
SKWSTTRMSN AVWCDESRID KGKGLNRTKK YPIESRKDLN DDCGFDDYPI AAYMDKCEPR  360
KRTKDSSYHP ELGNKSFKKI KLGPKSPEGC KNVEKKKYEC LNCKKSFNSF QALGGHRPCH  420
KKANAYLESL NGTGESSLDA DCDDKHRETS SSKKTASAAK DLSYNPEKKI KLKKSKGHEC  480
PFCDRVFKSG QALGGHKRSH FIVGTEQNMN RSSAVKKDVD DLLDLNLPAP VDDEDDDEHA  540
HLVSW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	252	259	KREERKVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	2e-47	C2H2 family protein