PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT33059.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 356aa MW: 39427.8 Da PI: 5.2477

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT33059.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.3	2.7e-07	11	43	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ ++ fC+ ++ +lC C +++H PHT33059.1 11 KLCDSCKTTSATVFCRADSAFLCLLCDSKIHAA 43 68****99*******************54 PP
2	zf-B_box	28.3	3.7e-09	53	98	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ PHT33059.1 53 VWVCEVCEQAPASVTCKADAAALCVTCDNDIHSAnplarrHERVPV 98 689****************************6689999999986 PP
3	CCT	70.5	4.1e-24	292	335	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ PHT33059.1 292 REARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 335 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MGLDTWSLTA KLCDSCKTTS ATVFCRADSA FLCLLCDSKI HAANKLASRH ARVWVCEVCE 60 QAPASVTCKA DAAALCVTCD NDIHSANPLA RRHERVPVVP FYDSNVEVKS HGGTDGDDDE 120 KNLFPDTCDQ PEEEAEAASW ILQNPKEVTD DQHQYKSSCV GDFSFNDMDS YLDMDIMSIE 180 QKPQIHHHHP EHQHHGNYSS TDGVVPEATT YLPGPVVDGF PSYEMDFAGS KPYLYNFNSQ 240 SISQSVSSSS MDVGVVPDHS IMTDESNTFM ITSSASGAVG DTVPNPLSGV DREARVMRYR 300 EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRTEIEID SLIAVDASSY GVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MGLDTWSLTA KLCDSCKTTS ATVFCRADSA FLCLLCDSKI HAANKLASRH ARVWVCEVCE  60
QAPASVTCKA DAAALCVTCD NDIHSANPLA RRHERVPVVP FYDSNVEVKS HGGTDGDDDE  120
KNLFPDTCDQ PEEEAEAASW ILQNPKEVTD DQHQYKSSCV GDFSFNDMDS YLDMDIMSIE  180
QKPQIHHHHP EHQHHGNYSS TDGVVPEATT YLPGPVVDGF PSYEMDFAGS KPYLYNFNSQ  240
SISQSVSSSS MDVGVVPDHS IMTDESNTFM ITSSASGAVG DTVPNPLSGV DREARVMRYR  300
EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRTEIEID SLIAVDASSY GVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-95	CO-like family protein