PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT31739.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YA

Protein Properties

Length: 431aa MW: 47888.5 Da PI: 10.5615

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT31739.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	82.3	8.2e-26	327	381	3	58
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQ+++IlkRR Rak ++++kl +k+rkpylh+SRh+h ++R+RgsgG F PHT31739.1 327 PIYVNAKQCSAILKRRWVRAKRQAQNKL-IKNRKPYLHKSRHRHTMKRARGSGGCF 381 9*************************.***********************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MPLTSVTGQL VAMIKMHINR AIHGKKRSKG HIGIVAINKH YVFLIIGITE REWVIHWVRT 60 LVTTVTSTPA SILAECGIGS FPGNPYIHSG DPVHSCSNVC DPIDRYESIN PLITKGESNP 120 HIVPSPKKER RGIGKAMAME ARLSPCGEGQ FCFDIKEFNS CLISTLRSFD GNKEIVLAET 180 TKPIEQGLSP QQVYKQGRNS DNNVNNGNKA YGKSSKSKNP IGNLYCSFMM MNGTVVPHSS 240 IVVTIISHYH GGCLVGKVVD RNLRLFRALR VIDGSTFTMS LGTNPQASLL MLGQDIATYG 300 SNAIIYPQMV GVTTTNEIPL ESIVIFPIYV NAKQCSAILK RRWVRAKRQA QNKLIKNRKP 360 YLHKSRHRHT MKRARGSGGC FLNTKNMQQS KPSSPKHDRN IFNHQAGVLA LAIRDSLTIH 420 PWILSGDRRT W

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MPLTSVTGQL VAMIKMHINR AIHGKKRSKG HIGIVAINKH YVFLIIGITE REWVIHWVRT  60
LVTTVTSTPA SILAECGIGS FPGNPYIHSG DPVHSCSNVC DPIDRYESIN PLITKGESNP  120
HIVPSPKKER RGIGKAMAME ARLSPCGEGQ FCFDIKEFNS CLISTLRSFD GNKEIVLAET  180
TKPIEQGLSP QQVYKQGRNS DNNVNNGNKA YGKSSKSKNP IGNLYCSFMM MNGTVVPHSS  240
IVVTIISHYH GGCLVGKVVD RNLRLFRALR VIDGSTFTMS LGTNPQASLL MLGQDIATYG  300
SNAIIYPQMV GVTTTNEIPL ESIVIFPIYV NAKQCSAILK RRWVRAKRQA QNKLIKNRKP  360
YLHKSRHRHT MKRARGSGGC FLNTKNMQQS KPSSPKHDRN IFNHQAGVLA LAIRDSLTIH  420
PWILSGDRRT W

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	30	GKKRSKG
2	366	375	RHRHTMKRAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17590.2	4e-26	NF-YA family protein