PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT31295.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 690aa MW: 76189.5 Da PI: 6.6844

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT31295.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.1	1.6e-11	266	322	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g PHT31295.1 266 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 322 57*****************4444.2455535555.779999************98 PP
2	AP2	46.7	7.9e-15	365	416	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PHT31295.1 365 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 416 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MSSMNNWLGF SLSPHEEVLT SQQSSHQECF DLMTSHHHHH ESTVVLPSLN VVPHDNTPFG 60 IFEAFNRNHH HQSQDWNTDD TNYKTTSEMS MLMGGSCNGQ HLENNQEPPK LENFLGIGEQ 120 KLQQVCSNNN NNTNNNGDYS IYCSPPSNII SENNANNIIG LSMIKNWLRN NPNTTTVATT 180 TTNPSCQDDK KDNGGVMVVV GGGGNAQSLS LSMSTGGGGG ENSCSSENNK QEIVNGNNGS 240 IIDGQISGAI EVVPKKSIDT FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR REGQTRKGRQ 300 GGYDKEEKAA RAYDLAALKY WGPTTTTNFP ISSYEKELEE MKHMTRQEYV ASLRRKSSGF 360 SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV 420 TNFEINRYDV KSILESSTLP IGGAAKRLKD VEQAEIALDY QRASQENIVN THLITSGSVG 480 SYGASHCWPN IALQQAQPLS AMHSYPYSQP RVWCKQEVQD SSDHLNVTSQ SYQDFHPLQL 540 GNGHNFMQTN SALHNLMGLD NSSMDHNSVA YHQGVGYASN GGNNHGVGFV LPHLSSIIPH 600 QESNHQQSQA NGYGENEVKQ LQLGNENLFG YYNSQQSTSN GSIKAGLYDH QESTCNNWMS 660 TAVPVALASR SNTMAVCHGA APTFTVWNDT

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MSSMNNWLGF SLSPHEEVLT SQQSSHQECF DLMTSHHHHH ESTVVLPSLN VVPHDNTPFG  60
IFEAFNRNHH HQSQDWNTDD TNYKTTSEMS MLMGGSCNGQ HLENNQEPPK LENFLGIGEQ  120
KLQQVCSNNN NNTNNNGDYS IYCSPPSNII SENNANNIIG LSMIKNWLRN NPNTTTVATT  180
TTNPSCQDDK KDNGGVMVVV GGGGNAQSLS LSMSTGGGGG ENSCSSENNK QEIVNGNNGS  240
IIDGQISGAI EVVPKKSIDT FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR REGQTRKGRQ  300
GGYDKEEKAA RAYDLAALKY WGPTTTTNFP ISSYEKELEE MKHMTRQEYV ASLRRKSSGF  360
SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV  420
TNFEINRYDV KSILESSTLP IGGAAKRLKD VEQAEIALDY QRASQENIVN THLITSGSVG  480
SYGASHCWPN IALQQAQPLS AMHSYPYSQP RVWCKQEVQD SSDHLNVTSQ SYQDFHPLQL  540
GNGHNFMQTN SALHNLMGLD NSSMDHNSVA YHQGVGYASN GGNNHGVGFV LPHLSSIIPH  600
QESNHQQSQA NGYGENEVKQ LQLGNENLFG YYNSQQSTSN GSIKAGLYDH QESTCNNWMS  660
TAVPVALASR SNTMAVCHGA APTFTVWNDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20840.1	1e-125	AP2 family protein