PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT31197.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 521aa MW: 57541.4 Da PI: 6.8745

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT31197.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.6	9.6e-11	240	296	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + rk + g ++ +++Aa+a++ a++k++g PHT31197.1 240 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 296 57*****************4444.2344336655.7799999***********98 PP
2	AP2	49.8	8.8e-16	339	390	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g PHT31197.1 339 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 390 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MAPDNNNWLS FSLSSMEMLN NSSPTSAHHH HHHQSNNMKL SSNFDLGSSS ADSHQYYFAD 60 NFFPHGWSNQ RLQVMYPDVE KEAMRINING DSSSLFQNFV DSQIHQQVPP KLEDFLGGDS 120 SSLTQDSSSL THMYNYNDPH SHHHQDFKSL TGFQAFSTNS GSEVENSVGT EFGTNESCNE 180 LGYTTCVAPP PPLAPAASTG ALSLAVNATT NHCPEKEKAI VAVVDESCKK ISDTFGQRTS 240 IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQGGYDKE DKAARAYDLA ALKYWGPTAT 300 TNFPVANYAN EVEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ GRWQARIGRV 360 AGNKDLYLGT FATEEEAAEA YDIAAIKFRG VNAVTNFEMN RYDVEAIMKS SLPVGGTAKR 420 LKLSLESEQK SSPSNQQLTQ CNSSSSNTSS SNNINFGAVP PVSAIPCGVP FDTATPAYYH 480 HNFFPYLHPG NAGVPDTSGA VTAMPLLSSA ADLYIWPHQS Y

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MAPDNNNWLS FSLSSMEMLN NSSPTSAHHH HHHQSNNMKL SSNFDLGSSS ADSHQYYFAD  60
NFFPHGWSNQ RLQVMYPDVE KEAMRINING DSSSLFQNFV DSQIHQQVPP KLEDFLGGDS  120
SSLTQDSSSL THMYNYNDPH SHHHQDFKSL TGFQAFSTNS GSEVENSVGT EFGTNESCNE  180
LGYTTCVAPP PPLAPAASTG ALSLAVNATT NHCPEKEKAI VAVVDESCKK ISDTFGQRTS  240
IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQGGYDKE DKAARAYDLA ALKYWGPTAT  300
TNFPVANYAN EVEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ GRWQARIGRV  360
AGNKDLYLGT FATEEEAAEA YDIAAIKFRG VNAVTNFEMN RYDVEAIMKS SLPVGGTAKR  420
LKLSLESEQK SSPSNQQLTQ CNSSSSNTSS SNNINFGAVP PVSAIPCGVP FDTATPAYYH  480
HNFFPYLHPG NAGVPDTSGA VTAMPLLSSA ADLYIWPHQS Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	1e-133	AP2 family protein