PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT30960.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 596aa    MW: 64955.4 Da    PI: 4.7121
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT30960.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.52.2e-1372125821374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAeav++++++la+al+ ++  la ++  +m+++a+yf+eALa+r+++        ++p+++ e++  ++l++   f+e++P+lkf+h+taN
  PHT30960.1 212 LVHTLMACAEAVQQENFNLADALVRHIGVLAVSQSGAMRKVATYFAEALARRIYK--------IHPQDSIESSYNDVLQM--HFYETCPYLKFAHFTAN 300
                 689****************************************************........66777765555666554..5**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea+ ++++vH++Df+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +va++l+dl+ ++L+++p
  PHT30960.1 301 QAILEAFTNCNKVHVVDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDTLQQVGWKLAQLADTIGVEFEFRGFVANSLADLDASMLDIRP 399
                 *************************************************************************************************** PP

        GRAS 199 ..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres........eerikvEr 287
                    Ea+aVn+v++lhrll++++++e+    vL+ +++++Pk+v++veqea+hn++ F +rf eal+yys++fdsle++ ++++        +++  +++
  PHT30960.1 400 seTEAVAVNSVFELHRLLARQGAIEK----VLDSIRQMNPKIVTLVEQEANHNAGVFIDRFNEALHYYSTMFDSLESSSSSHNgitqspvtNQDLLMSE 494
                 999*******************9999....*********************************************9995554455555666999***** PP

        GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +lgr+i+nvva eg++r+erhe+l++Wr+rl++aGF pv+l+++a kqa++ll+ ++ +dgyrv+e++g+l+lgW++rpL+++SaW+
  PHT30960.1 495 IYLGRQICNVVAYEGSDRVERHESLGQWRARLSSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVDENDGCLMLGWHTRPLIATSAWQ 582
                 ***************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    
MKRDRDREKG SSSKGKNWAS VEEEEQPDAG MDELLAVLGY KVKSSDMAEV AQKLEQLEMA  60
MGTSMEDGIS HLSTDTVHKN PSDLSGWVQS MLSELNSTSI SSNFGMSSSE NQLIVSGDGG  120
GGSCSSIIDF SRGNEEKKTT TAISDDDLRA IPGGAVFSSG RNRNEVDEES NKRQRSSFCS  180
SGGSNSSSGG NSLTDSARPV VLVDSQETGV RLVHTLMACA EAVQQENFNL ADALVRHIGV  240
LAVSQSGAMR KVATYFAEAL ARRIYKIHPQ DSIESSYNDV LQMHFYETCP YLKFAHFTAN  300
QAILEAFTNC NKVHVVDFSL KQGMQWPALM QALALRPGGP PAFRLTGIGP PQPDNTDTLQ  360
QVGWKLAQLA DTIGVEFEFR GFVANSLADL DASMLDIRPS ETEAVAVNSV FELHRLLARQ  420
GAIEKVLDSI RQMNPKIVTL VEQEANHNAG VFIDRFNEAL HYYSTMFDSL ESSSSSHNGI  480
TQSPVTNQDL LMSEIYLGRQ ICNVVAYEGS DRVERHESLG QWRARLSSAG FDPVHLGSNA  540
FKQASMLLAL FAGGDGYRVD ENDGCLMLGW HTRPLIATSA WQIAAEDDGA GEVELH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein