PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT30898.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 460aa MW: 51847.3 Da PI: 5.8883

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT30898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.9	7.7e-25	350	433	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev+aL+ +r+ +++++ +g +k+ Weev++ +++ g+ r+pk+Ckekwen+nk+yk++ ++ k r +++ ++cpyf++l+ PHT30898.1 350 RWPKSEVQALVSVRTCLDHKFLKG-AKGSVWEEVADGLAKMGYIRTPKKCKEKWENINKYYKRTIDSGKTR-PKNYRSCPYFHELD 433 8********************9.99**************************************98.888899****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MEPPLTDGAV RSPNDVASFA VNLSPFPQST TNAVYQTSVI PPPEIGQLPV RKLRPVRSYV 60 DNMPCNNSNS DSDLGFMTQF SAQNALPKEC DNDVTCVINQ CSELDVLPVE HLKTEFHANC 120 FNIISQARIL DAEFSSDLGC MSQFPAQNAS TVLPREGGFV DSLAGNGVAC LGNRCSEAKA 180 EISAVQQMKS EFHADCLNLI SQARILEAEF SSSSDDSESS EAIEEHLNRK RKRKTRKSIK 240 LYLEDVVRRL MDKQEQMHKQ LIEMIEKKEH ERIAREEAWK QQEVERAKRD GELRAEETSR 300 NLALISFLEN LLGEEFQIPK SSEISSIVKD EGEFHGQEAD ARSSDPCNRR WPKSEVQALV 360 SVRTCLDHKF LKGAKGSVWE EVADGLAKMG YIRTPKKCKE KWENINKYYK RTIDSGKTRP 420 KNYRSCPYFH ELDTLYKNGL LNHGAGNCVK SETESKNAEE

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MEPPLTDGAV RSPNDVASFA VNLSPFPQST TNAVYQTSVI PPPEIGQLPV RKLRPVRSYV  60
DNMPCNNSNS DSDLGFMTQF SAQNALPKEC DNDVTCVINQ CSELDVLPVE HLKTEFHANC  120
FNIISQARIL DAEFSSDLGC MSQFPAQNAS TVLPREGGFV DSLAGNGVAC LGNRCSEAKA  180
EISAVQQMKS EFHADCLNLI SQARILEAEF SSSSDDSESS EAIEEHLNRK RKRKTRKSIK  240
LYLEDVVRRL MDKQEQMHKQ LIEMIEKKEH ERIAREEAWK QQEVERAKRD GELRAEETSR  300
NLALISFLEN LLGEEFQIPK SSEISSIVKD EGEFHGQEAD ARSSDPCNRR WPKSEVQALV  360
SVRTCLDHKF LKGAKGSVWE EVADGLAKMG YIRTPKKCKE KWENINKYYK RTIDSGKTRP  420
KNYRSCPYFH ELDTLYKNGL LNHGAGNCVK SETESKNAEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	229	234	RKRKRK
2	229	237	RKRKRKTRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	9e-47	Trihelix family protein