PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT30716.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26772.6 Da    PI: 9.8987
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT30716.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.57.5e-181151343
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ 
  PHT30716.1 11 ITNDSSRKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPY 51
                89*************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MTRKKVKLAY ITNDSSRKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YDNAPEVWPN  60
VMGAQHVLSE FKRMPEMEQS KKMVNQESFM KQRIAKASEQ LKKQSKDNRE KEMTEVMYQA  120
LAGKGLQNLN LGDLNDLSWV IDQNMKGIYK RIEAIKKGAS TSSSSAAAAP QVAADPKPAV  180
TELGLEGMQR TQAEWLNDWM NNNTSEQQLG FGHGNEMIIT NFNNNHNANV WPNYFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAYITNDSSRKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-57M-type_MADS family protein