PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT30512.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 433aa MW: 48628.4 Da PI: 6.0894

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT30512.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.7	5.2e-17	153	202	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PHT30512.1 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 202 78*****************......55**********************997 PP
2	AP2	43.2	9.8e-14	245	295	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g PHT30512.1 245 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 295 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MWNLNDSPDQ IMEDELEEGY HSPIDEKGKR VGSVSNSSSS TVLVVDNGNS EEEEGERGKK 60 KGSTPSKIFG FSVSKDNLSS DSELPVVTRQ FFPVENESEM GDESTIFPRA QWAEIKFYTS 120 ESPLGTGSVA NPTEVSQQQP IKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL 180 GGFDTAHAAA RAYDRAAIKF RGVAADINFN LEDYEEDLKQ MSNLTKEEFV HVLRRQSTGF 240 PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEV EAARAYDKAA IKCNGKDAVT 300 NFDRSIYENE PNSSECTDNA DHNLDLSLGG SSSKKGGRET GENRDQNSSL QLDARWGHQG 360 SRPNKLPSQM GFDGQRREGY NETETLQLSD LTHLNSLGTL QPNINEVQRF GQYGEAHMVQ 420 AYPRQFSSYQ VSS

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MWNLNDSPDQ IMEDELEEGY HSPIDEKGKR VGSVSNSSSS TVLVVDNGNS EEEEGERGKK  60
KGSTPSKIFG FSVSKDNLSS DSELPVVTRQ FFPVENESEM GDESTIFPRA QWAEIKFYTS  120
ESPLGTGSVA NPTEVSQQQP IKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL  180
GGFDTAHAAA RAYDRAAIKF RGVAADINFN LEDYEEDLKQ MSNLTKEEFV HVLRRQSTGF  240
PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEV EAARAYDKAA IKCNGKDAVT  300
NFDRSIYENE PNSSECTDNA DHNLDLSLGG SSSKKGGRET GENRDQNSSL QLDARWGHQG  360
SRPNKLPSQM GFDGQRREGY NETETLQLSD LTHLNSLGTL QPNINEVQRF GQYGEAHMVQ  420
AYPRQFSSYQ VSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-114	AP2 family protein