PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT30439.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 326aa MW: 35549.6 Da PI: 9.5364

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT30439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.4	9.5e-20	11	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell +v+++G+++W++I++ ++ gR++k+c++rw + PHT30439.1 11 KGPWSPEEDELLQSLVEKHGPRNWTLISKSVP-GRSGKSCRLRWCNQ 56 79****************************.*********985 PP
2	Myb_DNA-binding	56.5	6.5e-18	65	107	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar + gRt++ +k++w++ PHT30439.1 65 AFTPEEDETIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 107 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MAARKDSDRI KGPWSPEEDE LLQSLVEKHG PRNWTLISKS VPGRSGKSCR LRWCNQLSPQ 60 VEHRAFTPEE DETIIRAHAK FGNKWATIAR LLSGRTDNAI KNHWNSTLKR KCPSMSEDLS 120 FDNPQPPLKR SASVGPSMMN PGSPSGSDLS DSGLSGSGSG LDLPQPLVYR PVPRTCCIFP 180 LPPPPAPSVP DPPTSLSLSL PGSVSVPGSG SFEKPRQSPQ TPPLPPPQPP PFAAVEKPIP 240 PPAPVLSSTP PFMAQIPQTQ QQSYEFCAPK SGEKQFFSPE FLSVLQAMIR KEVKSYMSGF 300 EKNGFCLQTD AIRNAVIKRI GISKIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	9e-70	MYB family protein