PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT30105.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 343aa MW: 39166.2 Da PI: 8.3479

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT30105.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9.1e-06	180	199	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ PHT30105.1 180 FACNICNKTFNRYNNMQMHM 199 78*****************9 PP
2	zf-C2H2	16.7	2.1e-05	264	286	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+F k + ++H +++ PHT30105.1 264 FSCRKCGKTFAVKGDWRTHEKNC 286 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MGIRNINFHV HHQDMDVCFQ APNNFIEWLK PSSNNSSLSP SPSSSSSSSS ILINHEPTNP 60 MTTFLKLPLL HNPSQQVEEN IYNINQTIQC LPLLSKLTDP KTEKKEEDYQ VKEENMEKVK 120 VSLHIGLPDV DEAKPFNFNK EEENKEKNTS TIINKGCNFN SESRFWIPTP AQILVGPMQF 180 ACNICNKTFN RYNNMQMHMW GHGSEYRKGP ESLRGTQPAA MLRLPCYCCA HGCKNNINHP 240 RAKPLKDFRT LQTHYKRKHG AKSFSCRKCG KTFAVKGDWR THEKNCGKLW YCTCGSDFKH 300 KRSLKDHIRS FGKGHSPLDG FEDNCKEYCV STGGSSDDDD EVN

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MGIRNINFHV HHQDMDVCFQ APNNFIEWLK PSSNNSSLSP SPSSSSSSSS ILINHEPTNP  60
MTTFLKLPLL HNPSQQVEEN IYNINQTIQC LPLLSKLTDP KTEKKEEDYQ VKEENMEKVK  120
VSLHIGLPDV DEAKPFNFNK EEENKEKNTS TIINKGCNFN SESRFWIPTP AQILVGPMQF  180
ACNICNKTFN RYNNMQMHMW GHGSEYRKGP ESLRGTQPAA MLRLPCYCCA HGCKNNINHP  240
RAKPLKDFRT LQTHYKRKHG AKSFSCRKCG KTFAVKGDWR THEKNCGKLW YCTCGSDFKH  300
KRSLKDHIRS FGKGHSPLDG FEDNCKEYCV STGGSSDDDD EVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-114	C2H2 family protein