PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29943.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 452aa MW: 49869.1 Da PI: 5.8724

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.2e-05	347	384	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L PHT29943.1 347 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 384 677888999*****998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MADEYQAGVC GGNWWNSSRS IFGSSLCASS VPLGNSNFAW PNDHLLDMKS SCRSNDESGN 60 SDESVVLQEL PKHDSTLQIL GIGLNSSSTS DNWNHTLIHG NDKSESSYPS ILLQDLNSSM 120 NYQQESGVDC SSNSFKQDFT LGMNHPITSS TNTDDQSTTM ISSTFPMDSS FSNYTSSLLQ 180 TLFENDPPNP TQQQQPQLQQ SMFAANNNQP VSFPTSSLNY RPDLNDFSPS LPKFPNSLMR 240 PSLALPKQTP SDFPNYSINA TAPLYNTSSA TSLNNMRGNL LPSMHQQLLQ SPTFNEKSSV 300 PNRTSKSNVE ELRESSSRVA KKSGNNVPTL KRARIETPSP LPSFKVRKEK LGDRITALQQ 360 LVSPFGKTDT ASVLHEAIEY IKFLHDQVNV LSTPYLKNGS TSQQQQQIVD KVKEQDLRSR 420 GLCLVPISST FPVATETTSD FWTPNFGGTT FR

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MADEYQAGVC GGNWWNSSRS IFGSSLCASS VPLGNSNFAW PNDHLLDMKS SCRSNDESGN  60
SDESVVLQEL PKHDSTLQIL GIGLNSSSTS DNWNHTLIHG NDKSESSYPS ILLQDLNSSM  120
NYQQESGVDC SSNSFKQDFT LGMNHPITSS TNTDDQSTTM ISSTFPMDSS FSNYTSSLLQ  180
TLFENDPPNP TQQQQPQLQQ SMFAANNNQP VSFPTSSLNY RPDLNDFSPS LPKFPNSLMR  240
PSLALPKQTP SDFPNYSINA TAPLYNTSSA TSLNNMRGNL LPSMHQQLLQ SPTFNEKSSV  300
PNRTSKSNVE ELRESSSRVA KKSGNNVPTL KRARIETPSP LPSFKVRKEK LGDRITALQQ  360
LVSPFGKTDT ASVLHEAIEY IKFLHDQVNV LSTPYLKNGS TSQQQQQIVD KVKEQDLRSR  420
GLCLVPISST FPVATETTSD FWTPNFGGTT FR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	2e-58	bHLH family protein