PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29755.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 223aa    MW: 25103.2 Da    PI: 9.4874
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29755.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.99.8e-221663348
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                 +n+sn qvtfskRr+g++KKA+EL++LC+ae+ +++fs+   +k+y 
  PHT29755.1 16 MKNESNMQVTFSKRRAGLFKKASELCTLCGAEIVIVVFSPgkANKVYS 63
                58************************************9722456665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MARLSKGRKK VEIVKMKNES NMQVTFSKRR AGLFKKASEL CTLCGAEIVI VVFSPGKANK  60
VYSFGHPSVE LLVDRFLGRD LPPPNDDDRY NHLIRAHRNT GQRGLNKEVM DIQESLQKEK  120
AIGKCLLESG RGAYDRVCES PIIEGLSLSQ LEQLKESLEA QREKLNSRQN FNKWGVMLHS  180
HFSPLEMPCL LLVVMGLVLH MDPMLVHPFL IRDGGSTSSA VPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-39M-type_MADS family protein