PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29749.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23562.2 Da    PI: 10.5566
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29749.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.19.9e-231662349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +n+s+ qvtf+kRr+g++KKA+EL++LC+ae+a+++fs++ k+y +
  PHT29749.1 16 MQNESKLQVTFCKRRAGLFKKASELCTLCGAEIAIVVFSPSRKVYSF 62
                6899*****************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MTRRSKGRQR IDISKMQNES KLQVTFCKRR AGLFKKASEL CTLCGAEIAI VVFSPSRKVY  60
SFGHPSVELL VDRFLGRNLP PPNNAGRHNH LLVIHRNAGL RELNKKVMDM EETFRMEKAR  120
GESILDIRRA NGGWWEAPIN ALNVSQLQQL MEAMKFLKQD VENEAQQLQM VSNVGLPFLT  180
FGSDLSPTYG ARACSTHGLN FGATFANRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-50M-type_MADS family protein