PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT29738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 209aa MW: 23496.2 Da PI: 10.8558 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.7 | 6.4e-23 | 16 | 62 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+s+ qvtfskRr+g++KKA+EL++LC+ae+a+++fs++ k+y + PHT29738.1 16 MQNESKLQVTFSKRRAGLFKKASELCTLCGAEIAIVVFSPSRKVYSF 62 6899*****************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence |
MTRRSKGRQR IDISKMQNES KLQVTFSKRR AGLFKKASEL CTLCGAEIAI VVFSPSRKVY 60 SFGHPSVELL VDRFLGRNLP PPNNAGRHNH LLVIHRNAGL RELNKKVMDM EETFRMEKAR 120 GESILDIRRA NGGWWEAPIN ALNLSQLQQL MEAMKFLKQD VEKEAQQLQM VTNVGLPFLT 180 FGSALSPTYG ARACSTHGLN VGATFANRV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-52 | M-type_MADS family protein |