PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29735.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 134aa    MW: 15447.8 Da    PI: 10.7031
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29735.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.21.2e-191664349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyey 49
                 en+sn qvtfskRr+g++KK +E ++LC+ae+a+++fs+   +k+y +
  PHT29735.1 16 MENESNLQVTFSKRRAGLFKKTSEHCTLCGAEIAIVVFSPgkANKVYSF 64
                69************************************97224666655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    
MPRRRNGRKR VDIVKMENES NLQVTFSKRR AGLFKKTSEH CTLCGAEIAI VVFSPGKANK  60
VYSFGHPSVE LLVNRFHGRD LPPPNNEGRH NHLLMNHQNV VLRELNKEVM NMEEILQMEK  120
SRGESILEIR RSSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-37M-type_MADS family protein