PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT29731.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 132aa MW: 15275.7 Da PI: 10.2909 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.9 | 9.6e-22 | 16 | 64 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyey 49 en+sn qvtfskRr+g++KKA+EL++LC+ae+ +++fs+ +k+y + PHT29731.1 16 MENESNLQVTFSKRRAGVFKKASELCTLCGAEITIVVFSPgkANKVYSF 64 69************************************97224566655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence |
MPRRRKGRKR VDIVKMENES NLQVTFSKRR AGVFKKASEL CTLCGAEITI VVFSPGKANK 60 VYSFDHPSVE LLVDRFLGRD LPPPNNEGRH NHLLMNHRNV VLRELNKEVM NMEEILQMEK 120 SRGESILENT FL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 6 | PRRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-39 | M-type_MADS family protein |